RNA id: TCONS_00046360


Basic Information

Item Value
RNA id TCONS_00046360
length 1464
RNA type mRNA
GC content 0.40
exon number 9
gene id XLOC_023438
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21978230 ~ 21989406 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGCATTGAGGCTTTTGTCCTCACAGACACGCCGTAGCAGACAGATGCGCTGCTGAAAGATGTCAAATCTTGGGAAAATAGCAAAGGTGGTTCTGCCCATGGCAGTGCCCGGAGCCCTTGGTCTGATGTCTACCACTGTTTTTGCTGCAAGCAATGCCAAAGAAAACAGCGCCATCTTGATGACTGATGAGCTCTCACTGTATGACACACCTGAGCCGCGGCTGAGGTACGAGGAGCCTGATGTCGGGCCTGTTGAACAGGGTGTGGCGTCTCTGAGAAAGACTGTTGAACCTTATTGTTCATGGTGTCAGGAAAGGACACAGTTTGCTGTGGATAAAATACAGtCTTACTATAAAACAGTTGAGCCTGGTGTGGATACCACTCAAAATATCGTACAGGatatatttacatttttgaaagacCCTCCATCGGAGTTTTACCCCAGTGTAGGCGTCATTGGGTTTTCTGGAATCCTGGGCCTTTTTTTTGCAAAAGGCAGCACGGTCAAAAGGCTGATATTTCCCACTGGGCTGATGGCTCTCTGTGCCTCTGTGTTTTACCCACAACACGCCGCCTCTGCTGCCAGGaCCACAAAGGACTACATGTACTCGTGGGGTTCAGAGGGGCGAGCTGTTTTGGAGGAGCTGCTGAGAGGAAAATCTTCTTCCAAGGACAAAGCTGACAAGACACAGAAATCAGACAGCCAAAAATCAAGTTGAGACAAAGCAGCTCATTTTATGAAGAGTTCCTGCTTCGCACCTGGATTCTCTTCTCTTATCGGTGTACTGATCAGTATGGTGGTATTTATTACTCTATTACAATGTTGGCAGTGTTCACTGTAATTGTATTCAGCGATGTTTTGTGAATTATATAAATGTacttttatatataaatgcacattataatAGCAACCATTTGGACCAAGCTGAAAGACAGAATCACCTGCATGACTTGTACTGTGCGAATCTGAATGTTGctgaatatttatttacttatacatCCATTTCCAGAGCTTTCTAGATGGGTGCTCGCTTCACTTTCTCCAGGGTTTTCAATGTCACTAAACAAAGATCCAATTTATAAGTTTTATAGTAACTTACAATTTCACAAACCATGAATTTGGTCTGTGCATAAACAAAGAGACATTTTGCAAATTACAGCATCGTCCAGGATCCATTCTGTGCATTCAGCAGTCCCAATTTTACCACTGTGAATTTCACATTTGTATTAGAAGGAAAGCCTGAAGGTATTACTTAAATATAattcttaatatttatttgtttagatttttaatacattaaattgGATACAAAAAAGCTGATTGATAAGCTAATCTTACATATACACTACAGAATATGACACAAGTACTACAGTAACTTCTTCTAGAGTACATTACTGTTTGTTAATATAATCAATAACACAGAGTAtctaaaatattgaattaaagaTCTACAAACTGAGAAA

Function

GO:

id name namespace
GO:0042407 cristae formation biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0061617 MICOS complex cellular_component
GO:0005739 mitochondrion cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041001-40 Predicted to be involved in cristae formation. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Predicted to be part of MICOS complex. Orthologous to human APOO (apolipoprotein O).

Ensembl:

ensembl_id ENSDART00000032963

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046337 lncRNA downstream 357974 21611602 ~ 21620256 (-) True XLOC_023424
TCONS_00046855 lncRNA downstream 608476 21331016 ~ 21369754 (-) False XLOC_023421
TCONS_00046322 lncRNA downstream 608650 21368211 ~ 21369580 (-) True XLOC_023421
TCONS_00047176 lncRNA downstream 747059 21226533 ~ 21231171 (-) False XLOC_023420
TCONS_00047177 lncRNA upstream 64403 22053809 ~ 22066831 (-) True XLOC_023442
TCONS_00046366 lncRNA upstream 81815 22071221 ~ 22074272 (-) False XLOC_023443
TCONS_00046367 lncRNA upstream 81815 22071221 ~ 22077479 (-) False XLOC_023443
TCONS_00046370 lncRNA upstream 134480 22123886 ~ 22149868 (-) False XLOC_023444
TCONS_00046373 lncRNA upstream 701577 22690983 ~ 22701598 (-) False XLOC_023444
TCONS_00046356 mRNA downstream 4865 21959708 ~ 21973365 (-) False XLOC_023436
TCONS_00046355 mRNA downstream 4865 21959708 ~ 21973365 (-) False XLOC_023436
TCONS_00046359 mRNA downstream 5067 21964050 ~ 21973163 (-) True XLOC_023436
TCONS_00046354 mRNA downstream 26066 21938741 ~ 21952164 (-) True XLOC_023435
TCONS_00046353 mRNA downstream 43659 21923348 ~ 21934571 (-) True XLOC_023434
TCONS_00046361 mRNA upstream 1558 21990964 ~ 21991770 (-) True XLOC_023439
TCONS_00046362 mRNA upstream 12684 22002090 ~ 22003031 (-) True XLOC_023440
TCONS_00046363 mRNA upstream 25404 22014810 ~ 22015751 (-) True XLOC_023441
TCONS_00046364 mRNA upstream 80884 22070290 ~ 22103585 (-) False XLOC_023443
TCONS_00046368 mRNA upstream 129398 22118804 ~ 22702017 (-) False XLOC_023444
TCONS_00046358 other downstream 10114 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046357 other downstream 15062 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046316 other downstream 833930 21139322 ~ 21144300 (-) True XLOC_023418
TCONS_00046297 other downstream 1319562 20647475 ~ 20658668 (-) False XLOC_023409
TCONS_00046286 other downstream 1446644 20450027 ~ 20531586 (-) False XLOC_023407
TCONS_00046365 other upstream 81815 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046371 other upstream 319538 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046372 other upstream 382580 22371986 ~ 22372100 (-) True XLOC_023446
TCONS_00046386 other upstream 1283836 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046400 other upstream 1981650 23971056 ~ 23977285 (-) False XLOC_023458

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_04825678_04826167.mRNA True 433 mRNA 0.34 2 CI01000018 4825441 ~ 4826167 (-)