RNA id: TCONS_00046362


Basic Information

Item Value
RNA id TCONS_00046362
length 942
RNA type mRNA
GC content 0.46
exon number 1
gene id XLOC_023440
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 22002090 ~ 22003031 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAGCTTACAGCCtgtgcttgcttgcttgtttgtttaatgtttgtgCTCCTGTTTTGGCTGAGTTTGGATTTAAAGTAATTGAGCTAAACAATAGCTACACTGCTAAATGATGGATGTTCAAAGGTATTTGGCTCGTATCGGCTGTTCTGGTCCATGTCCCCCGACACTGGAGACTCTGCGATATCTACACCTGAACCACTTACTGACGGTTCCCTTTGAAAACCTCACCATTCACACCCGGGGTCGGGTCAGGCTGGAGCTGCCACTTCTGTATGAAAAAATCGTGGTGAATCATCGTGGAGGATTCTGCTTTGAGATTAACGGACTCTTCTCCTGGCTGCTGTCTCAGATGGGTTATGATGTCACTTTGCTCTCGGCACAGGTAAGGAGTCGGTTCACCGGAGCTTACGGACCTCCATTCGACCACTTGTTCTTGATGGTGAAGGTGGATGAACACAGGTGGCTCTGCGATGTTGGGTTTGGGTCTGGATTCCAGCTTCCTCTTTCTCTTGAGACTGACAGTCCTCAGATCCAGAGCCACGGCGTTTATCGCCTCAGATCTGAAGGAAACTTGATTTTCATGGAAAGTAAGTCAGAGATTGGTGGGGAATGTTGGACAGAACAGTATAAGTTCACTCTTGAGCCTCGAGACAGAGCTGATTTCAGAGCCATGTGTGACTACCATCAGAGTTCTGTTAGCTCACTTATGTTCTGCAAGTCTCTCTGTTCACTGTTGTTGCCCACCGGGAGAATCACCATCATGGGCCGCAGACTGATTATAAGCAGTTTGGGCTCAGGTGATGGAGAACATGCATCAAGAACCATAACAGATCTTTCAGATGAAGAAATCACAGAGTTGTTGAGGGAGAAGTTTGGAATTGTTCTTCAAGCTCCACTCATTCCTAAAGATAACGTGGTTTTACCACCAATCAAGTAttaa

Function

GO:

id name namespace
GO:0016407 acetyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0004060 arylamine N-acetyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-62 Predicted to enable arylamine N-acetyltransferase activity. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); carcinoma (multiple); contact dermatitis (multiple); leukemia (multiple); and lung disease (multiple). Orthologous to human NAT1 (N-acetyltransferase 1) and NAT2 (N-acetyltransferase 2).

Ensembl:

ensembl_id ENSDART00000133627

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046337 lncRNA downstream 381834 21611602 ~ 21620256 (-) True XLOC_023424
TCONS_00046855 lncRNA downstream 632336 21331016 ~ 21369754 (-) False XLOC_023421
TCONS_00046322 lncRNA downstream 632510 21368211 ~ 21369580 (-) True XLOC_023421
TCONS_00047176 lncRNA downstream 770919 21226533 ~ 21231171 (-) False XLOC_023420
TCONS_00047177 lncRNA upstream 50778 22053809 ~ 22066831 (-) True XLOC_023442
TCONS_00046366 lncRNA upstream 68190 22071221 ~ 22074272 (-) False XLOC_023443
TCONS_00046367 lncRNA upstream 68190 22071221 ~ 22077479 (-) False XLOC_023443
TCONS_00046370 lncRNA upstream 120855 22123886 ~ 22149868 (-) False XLOC_023444
TCONS_00046373 lncRNA upstream 687952 22690983 ~ 22701598 (-) False XLOC_023444
TCONS_00046361 mRNA downstream 10320 21990964 ~ 21991770 (-) True XLOC_023439
TCONS_00046360 mRNA downstream 12684 21978230 ~ 21989406 (-) True XLOC_023438
TCONS_00046356 mRNA downstream 28725 21959708 ~ 21973365 (-) False XLOC_023436
TCONS_00046355 mRNA downstream 28725 21959708 ~ 21973365 (-) False XLOC_023436
TCONS_00046359 mRNA downstream 28927 21964050 ~ 21973163 (-) True XLOC_023436
TCONS_00046363 mRNA upstream 11779 22014810 ~ 22015751 (-) True XLOC_023441
TCONS_00046364 mRNA upstream 67259 22070290 ~ 22103585 (-) False XLOC_023443
TCONS_00046368 mRNA upstream 115773 22118804 ~ 22702017 (-) False XLOC_023444
TCONS_00046369 mRNA upstream 119206 22122237 ~ 22533959 (-) False XLOC_023444
TCONS_00046374 mRNA upstream 737512 22740543 ~ 22756508 (-) False XLOC_023447
TCONS_00046358 other downstream 33974 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046357 other downstream 38922 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046316 other downstream 857790 21139322 ~ 21144300 (-) True XLOC_023418
TCONS_00046297 other downstream 1343422 20647475 ~ 20658668 (-) False XLOC_023409
TCONS_00046292 other downstream 1531000 20470954 ~ 20471090 (-) True XLOC_023407
TCONS_00046365 other upstream 68190 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046371 other upstream 305913 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046372 other upstream 368955 22371986 ~ 22372100 (-) True XLOC_023446
TCONS_00046386 other upstream 1270211 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046400 other upstream 1968025 23971056 ~ 23977285 (-) False XLOC_023458

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_04832762_04833610.mRNA True 1415 mRNA 0.41 1 CI01000018 4832354 ~ 4833768 (-)