RNA id: TCONS_00046370


Basic Information

Item Value
RNA id TCONS_00046370
length 650
lncRNA type retained_intron
GC content 0.49
exon number 4
gene id XLOC_023444
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 22118804 ~ 22732001 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTAAACCACGCTGACAGAATAACAGTGGGCTAATGTAGCGTACATAGATCCTGAGGAAAGCATATTGTGTTGTGTATCTAGTAgaccaaataaatgaattaacgcATGGTATTATAGACTTTTCTCTGTCTCGCTCTTTATTTTTCTAGGACGGCTACTCGCAGTATCACTTTGTTGGCTCTGCCTCAACAATAGAGAGAGACAGGCAGAGGCCGTACTCATCCTCACGCACCCCGTCAGTATCACCGGTCCGGACGTCCCCTAACAACCGATCGGCCAGCGCTCCTGCTTCACCCAGAGAGATGATCAGTCTCAAGGACAGGAAGAGCGAATTCGACTCCACTGGAACCAATGCTACTTATCATGCAAATAAAGGAGAACACACTGCCAGAAAGGACACAATGGCAGTTCAAACCTCCTGTGGAACATCCACATTGTTCCGGAATTCGTATGAGACTTCAAATGACGAGATCAAACACAACCAGGTCCCAGTGCCACCCATCCCGCAGGAGCCCCCGCTCAAGGACTACGAGCCGTACCCCATCTATCAAAACTCCACTAGGAACTTTGAGGAGCCATTTTTTGAGGATCAGGTCCATCGCCCCCCTCCCGCCACCGATCTCAATATGCACCTGGGACTTAAATCCAC

Function

GO:

id name namespace
GO:0098609 cell-cell adhesion biological_process
GO:0007043 cell-cell junction assembly biological_process
GO:0060997 dendritic spine morphogenesis biological_process
GO:0005886 plasma membrane cellular_component
GO:0005911 cell-cell junction cellular_component
GO:0005912 adherens junction cellular_component
GO:0005634 nucleus cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0005737 cytoplasm cellular_component
GO:0045296 cadherin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-60 Predicted to enable cadherin binding activity. Predicted to be involved in cell-cell adhesion; cell-cell junction assembly; and dendritic spine morphogenesis. Predicted to act upstream of or within cell adhesion. Predicted to be located in cell junction. Predicted to be active in several cellular components, including adherens junction; nucleus; and postsynaptic density. Human ortholog(s) of this gene implicated in anxiety disorder; major depressive disorder; and schizophrenia. Orthologous to human CTNND2 (catenin delta 2).

Ensembl:

ensembl_id ENSDART00000142587

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046367 lncRNA downstream 46407 22071221 ~ 22077479 (-) False XLOC_023443
TCONS_00046366 lncRNA downstream 49614 22071221 ~ 22074272 (-) False XLOC_023443
TCONS_00047177 lncRNA downstream 57055 22053809 ~ 22066831 (-) True XLOC_023442
TCONS_00046337 lncRNA downstream 503630 21611602 ~ 21620256 (-) True XLOC_023424
TCONS_00046855 lncRNA downstream 754132 21331016 ~ 21369754 (-) False XLOC_023421
TCONS_00046373 lncRNA upstream 541115 22690983 ~ 22701598 (-) False XLOC_023444
TCONS_00047178 lncRNA upstream 541115 22690983 ~ 22731551 (-) False XLOC_023444
TCONS_00047179 lncRNA upstream 578596 22728464 ~ 22732001 (-) True XLOC_023444
TCONS_00046376 lncRNA upstream 601090 22750958 ~ 22756509 (-) True XLOC_023447
TCONS_00046857 lncRNA upstream 729073 22878941 ~ 22923061 (-) False XLOC_023448
TCONS_00046364 mRNA downstream 20301 22070290 ~ 22103585 (-) False XLOC_023443
TCONS_00046363 mRNA downstream 108135 22014810 ~ 22015751 (-) True XLOC_023441
TCONS_00046362 mRNA downstream 120855 22002090 ~ 22003031 (-) True XLOC_023440
TCONS_00046361 mRNA downstream 132116 21990964 ~ 21991770 (-) True XLOC_023439
TCONS_00046360 mRNA downstream 134480 21978230 ~ 21989406 (-) True XLOC_023438
TCONS_00046374 mRNA upstream 590675 22740543 ~ 22756508 (-) False XLOC_023447
TCONS_00046375 mRNA upstream 591665 22741533 ~ 22756566 (-) False XLOC_023447
TCONS_00046384 mRNA upstream 1091576 23241444 ~ 23323526 (-) False XLOC_023449
TCONS_00046383 mRNA upstream 1091576 23241444 ~ 23323526 (-) False XLOC_023449
TCONS_00046385 mRNA upstream 1092446 23242314 ~ 23320223 (-) True XLOC_023449
TCONS_00046365 other downstream 26123 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046358 other downstream 155770 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046357 other downstream 160718 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046316 other downstream 979586 21139322 ~ 21144300 (-) True XLOC_023418
TCONS_00046297 other downstream 1465218 20647475 ~ 20658668 (-) False XLOC_023409
TCONS_00046371 other upstream 159076 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046372 other upstream 222118 22371986 ~ 22372100 (-) True XLOC_023446
TCONS_00046386 other upstream 1123374 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046400 other upstream 1821188 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046409 other upstream 1952853 24102721 ~ 24118395 (-) False XLOC_023462

Expression Profile

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