RNA id: TCONS_00047181


Basic Information

Item Value
RNA id TCONS_00047181
length 1748
lncRNA type inter_gene
GC content 0.50
exon number 13
gene id XLOC_023448
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 22878941 ~ 23218030 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTGGGGTTTGTTTTTGACAGGTTTGCTGTACTCTCCTGTGTACAGAGTGCCCATGCCAAGATCCTGCTGCTGTACCTTTAGCCGTGACGAGTCAGCCCCTGCGCCAGCTGTGCCCATGGGGCAGCATCAGTCGTAACAAGAGTCTGTGTGACTGTTTCAGCGCAGCCCCATTGTGGTGTTAGAGGATAATAACACTCAGTTTCTTTTTGTCAGTGTGTTTTGCTGGATGATAAACACAGGGGAGGAAGGACCAGAGAAGGAGCTGAGGCTTGAAGAGgtgaactgtacctttaagctAATATAATGAAGGCATGTCTGCTGGTTTGGGAGTGGACCTGAAGCGGGTCAGTGGGAGAAAGAGCCATGTGGTTTGGGGACTTGACCTTCCAAAGCCAGAGGACCTCTGAAGGCTCAGGTGGAAGATCTGAGGAAACAGCTCAAGGCCAAGAGCGGGATTATTCAAAGTCTGAAAGAGGAAATTAAGACTCCTTTGTTCCAGCATGCACAAAAGAAGAATGAGGTGCACGATTAAGAAAAAAACCTCATAAAAAATATCAAACCTTTGACCATCGCAAGAAAAGGTCTGCAAGGGATGGAACACACACTTTGGGAAAGtTGCAGGCCAGCAAGGAGAACGTTAATATCCCAGGCTTAAAAGTCGGCTTGCTCAAGTCCAAATTACAGGAAAAGACAGAACAATCTCAACAGCTGCAAGATCAAATTCTCAAGCAGCGGGAGGCTTTAAGTAGGGCAAGCCAAACTCTCAAAGACACCAGGAAAGCAGCTGGCAAGAAGgaatccCTGGAAACCTGTTAGCTGCCAGTTTTACGGCACTCGATGCGTGTTGGAATGTAAGATCAGATGCAGCTTTTCTTTGGATACGACTGAGACGTATCTACAGGAGCTGCAGTGGTTAAGCTGGGCCCTGGAGGAATCCCACATAGACACCGTTCACCTCTGCCAGGATTGAACACCGCCGGTCAGCAACACCACTCGCTGGATCAAAGAGCACAATGTGTGTTTTCGTCTGCAGGGGAGCTCAGATGCCTTGGAGGTGGAACTGAGGGCCCTTAGAGCTCAGGCAGATGTGAAGGAGGCCAACAGTCACGGTTAGAGGTAGAAGTAATCTGTCACCAGCTCTGTCAGCGCTGACTTCACTTCTAACAGAGCAGTCAGCACGATAATCTAGTTGCCTGTAACTTCAGTCAAATTGAAGATGTTCCATCAAAGCTGGAATCCAATATGGAGGCCATTCCAGTTCGCCGACAGCTGACCGTTACCTCCATATGGGCGGCTTTCCTGCTATTACCAGTTAGTTCGCCATGTACTTTGGCAGACTttagacgcagagaggagctgaccatgacGACGGATTTTGAGTCCAGCggaaaacagttccagaaagcagTTTAAGGAGACAGAAAGCAGTGGGAGAGCAGAAGGGGAACACGATCACGAAAAGACCTCAGGCCAGAACTCAGGAGTGCCAAGACTTTGGCTCAGGCAATATCAGGTGTGACGCGCCGGGCCTGGTGTGAGCCTCCGTCCATTGTCCTGCCGAACACACATCCCGCTCCCTGGAGAATAGCCTCCTCTCCCCGGCCGCGCCAATCCCAGGACAGAAAACTCGCAACAAAAGgagaAGGAGCTTGCTGACACCTTATTCACAGGGTTATGTGACGACGTCGGTTTCTGATTACTTCCAAATGGTGTTACGATGAAAATTGCGAACTTCGACCTGTGGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046376 lncRNA downstream 123351 22750958 ~ 22756509 (-) True XLOC_023447
TCONS_00047179 lncRNA downstream 147859 22728464 ~ 22732001 (-) True XLOC_023444
TCONS_00047178 lncRNA downstream 148309 22690983 ~ 22731551 (-) False XLOC_023444
TCONS_00046373 lncRNA downstream 178262 22690983 ~ 22701598 (-) False XLOC_023444
TCONS_00046370 lncRNA downstream 729992 22123886 ~ 22149868 (-) False XLOC_023444
TCONS_00047188 lncRNA upstream 189449 23383112 ~ 23632901 (-) False XLOC_023451
TCONS_00047189 lncRNA upstream 272771 23466434 ~ 23642626 (-) False XLOC_023451
TCONS_00047190 lncRNA upstream 308281 23501944 ~ 23642626 (-) False XLOC_023451
TCONS_00047191 lncRNA upstream 395812 23589475 ~ 23642626 (-) False XLOC_023451
TCONS_00046387 lncRNA upstream 396082 23589745 ~ 23633052 (-) False XLOC_023451
TCONS_00046375 mRNA downstream 123294 22741533 ~ 22756566 (-) False XLOC_023447
TCONS_00046374 mRNA downstream 123352 22740543 ~ 22756508 (-) False XLOC_023447
TCONS_00046368 mRNA downstream 177843 22118804 ~ 22702017 (-) False XLOC_023444
TCONS_00046369 mRNA downstream 345901 22122237 ~ 22533959 (-) False XLOC_023444
TCONS_00046364 mRNA downstream 776275 22070290 ~ 22103585 (-) False XLOC_023443
TCONS_00046384 mRNA upstream 47781 23241444 ~ 23323526 (-) False XLOC_023449
TCONS_00046383 mRNA upstream 47781 23241444 ~ 23323526 (-) False XLOC_023449
TCONS_00046385 mRNA upstream 48651 23242314 ~ 23320223 (-) True XLOC_023449
TCONS_00046390 mRNA upstream 452981 23646644 ~ 23671709 (-) False XLOC_023452
TCONS_00046391 mRNA upstream 454123 23647786 ~ 23671383 (-) False XLOC_023452
TCONS_00046372 other downstream 507760 22371986 ~ 22372100 (-) True XLOC_023446
TCONS_00046371 other downstream 570802 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046365 other downstream 782097 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046358 other downstream 911744 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046357 other downstream 916692 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046386 other upstream 79579 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046400 other upstream 777393 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046409 other upstream 909058 24102721 ~ 24118395 (-) False XLOC_023462
TCONS_00046414 other upstream 942239 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other upstream 942265 24135928 ~ 24146875 (-) True XLOC_023462