RNA id: TCONS_00004457


Basic Information

Item Value
RNA id TCONS_00004457
length 1434
RNA type mRNA
GC content 0.49
exon number 6
gene id XLOC_002348
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 39164638 ~ 39179337 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATCCACAATTGCAGCCTTTGTTGTCCGAATGAGAGGACTCTTTCTTCCAGACGGATGACCTCTCTTTTTCCTCACTGGCCCTGGCACTGCTGACACCAGATCAGCAGccgtttctctctttctctctctgtattTATTGTCTTTCTTTATCAAAGTCCATGAGCGGGATCTCAGACTGATAAACAGTGTGTTGATGTCTGTGTCAGGACTACGAGAGCTTGATGGAATCTATTTCCTGTTGGATGTGCTGAGAGATCCTGGTGTTATGAAGAAAGAGGGATAAACAGCAGAGAGCTGCTTAATGCACGGAAACTGAAAAAACATCTCTATCCCACATCTGCTGCAGGAGTATCTGTTGAAGATGTGAAACTGAAGACACAAACACTCGAACACTTCTCAAGAGGCCAGAGATTATAAAAGACATGCCGAAGAGAAAGGATGTCCTGGCactcattttaattgtattaccGTGGACTTTACTCATCACGCTTTGGCATCAACGTGCTGGAAATCCACTTCTGCCGATACCTAGAGATAACAGAACCGGGACAAGTAAAGCTCACCAGAGAAGCTTTAGGCTCCAGAAGCCCTGTCTGTCGGAGAACAAGCACATCCCTGAAGTCACCCGTATGAAGTCCATCCACAGCCGCTCTCCAGCATGGAGCAACGCTTTACCAACTCTCCACATAATAACACCAACCTACAGCAGGCCGGTCCAGAAAGCAGAGCTGACCAGACTCGCCAACACTCTTCTGCATGTCCCAAACCTTCACTGGCTGCTGGTGGAGGACTCGGCACAGAAAACTCCGCTCGTGTCCCGACTTTTGGAGAACAGCAGACTCAATTACACACACTTGAATGTCGAGACGCCTCCGAACCTCAAAGTGCAACGGACGAAATTTAGAAATGCACGCATCCCTCGTGGCACCATGCAGAGGAACCTGGCTCTCCGCTGGCTGCGGGCGAACATTGGCCCACGCTTGGGACAGTCAGGAGTCGTGTATTTTGCAGATGATGATAACACGTATAGTTTGGAGCTGTTTGAGGAGATGCGCTGGACTCATAAAGCATCAGTCTGGCCAGTTGCCTTCGTCGGAGGTCTCCGGTACGAATCGCCCAAAATCAACTCTCAGGGCAAAGTGTCCGGCTGGAGGACGGTTTTTGACCCTCGCCGACCTTTCGCCATCGACATGGCTGGGTTTGCCGTGAACCTTCAACTCATCCTGAGCAAGCCACAGGCCTACTTTAAGTTAAAAGGGGTAAAAGGTGGATATCAGGAGAGCAGTCTGTTACAGGACCTGGTCACCCTCAGTGACCTGGAGCCCAAAGCTGATAACTGCACAAAGGTTCTGGTTTGGCACACTCGAACAGAAAGACCCTTGCTAGTGAATGAAGGAAAAAAAGGATTCACAGATGGCAGGGTGGAAGTATGA

Function

GO: NA

KEGG:

id description
ko00515 Mannose type O-glycan biosynthesis
ko01003 Glycosyltransferases

Ensembl:

ensembl_id ENSDART00000188997

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004454 lncRNA upstream 76785 39084012 ~ 39087853 (+) True XLOC_002346
TCONS_00004449 lncRNA upstream 404194 38749266 ~ 38760444 (+) False XLOC_002344
TCONS_00005933 lncRNA upstream 405429 38749366 ~ 38759209 (+) True XLOC_002344
TCONS_00005729 lncRNA upstream 413126 38749352 ~ 38751512 (+) False XLOC_002344
TCONS_00005932 lncRNA upstream 731429 38432338 ~ 38433209 (+) True XLOC_002332
TCONS_00004466 lncRNA downstream 104659 39283996 ~ 39285617 (+) True XLOC_002352
TCONS_00005730 lncRNA downstream 149965 39329302 ~ 39393816 (+) True XLOC_002354
TCONS_00005731 lncRNA downstream 601224 39780561 ~ 39780849 (+) True XLOC_002357
TCONS_00005934 lncRNA downstream 729801 39909138 ~ 39917508 (+) True XLOC_002359
TCONS_00005935 lncRNA downstream 943037 40122374 ~ 40198832 (+) False XLOC_002361
TCONS_00004455 mRNA upstream 41425 39091353 ~ 39123213 (+) False XLOC_002347
TCONS_00004456 mRNA upstream 41518 39091716 ~ 39123120 (+) True XLOC_002347
TCONS_00004451 mRNA upstream 190193 38775959 ~ 38974445 (+) False XLOC_002345
TCONS_00004450 mRNA upstream 206363 38775408 ~ 38958275 (+) False XLOC_002345
TCONS_00004453 mRNA upstream 206897 38813389 ~ 38957741 (+) True XLOC_002345
TCONS_00004458 mRNA downstream 20210 39199547 ~ 39207488 (+) False XLOC_002349
TCONS_00004459 mRNA downstream 20876 39200213 ~ 39207900 (+) True XLOC_002349
TCONS_00004460 mRNA downstream 33264 39212601 ~ 39234155 (+) False XLOC_002350
TCONS_00004461 mRNA downstream 33561 39212898 ~ 39231403 (+) True XLOC_002350
TCONS_00004462 mRNA downstream 69574 39248911 ~ 39273031 (+) False XLOC_002351
TCONS_00004447 other upstream 480858 38683666 ~ 38683780 (+) True XLOC_002342
TCONS_00004441 other upstream 616433 38548089 ~ 38548205 (+) True XLOC_002336
TCONS_00004438 other upstream 675809 38488708 ~ 38488829 (+) True XLOC_002333
TCONS_00004421 other upstream 2016854 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004415 other upstream 2203948 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004472 other downstream 513040 39692377 ~ 39699487 (+) True XLOC_002355
TCONS_00004473 other downstream 581417 39760754 ~ 39760879 (+) True XLOC_002356
TCONS_00004486 other downstream 1371393 40550730 ~ 40550954 (+) True XLOC_002366
TCONS_00004487 other downstream 1375580 40554917 ~ 40555131 (+) True XLOC_002367
TCONS_00004493 other downstream 1420598 40599935 ~ 40600502 (+) True XLOC_002373

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000197_00257810_00265023.mRNA True 2765 mRNA 0.45 5 CI01000197 257629 ~ 266302 (+)