RNA id: TCONS_00046378


Basic Information

Item Value
RNA id TCONS_00046378
length 1476
lncRNA type lincRNA
GC content 0.44
exon number 2
gene id XLOC_023448
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 22878941 ~ 23218030 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTGATTTTAAGGGAATTTAATTTCTCTCtcattctgtctttctctctcagtTGCAGGCCAGCAAGGAGAACGTTAATATCCCAGGCTTAAAAGTCGGCTTGCTCAAGTCCAAATTACAGGAAAAGACAGAACAATCTCAACAGCTGCAAGATCAAATTCTCAAGCAGCGGGAGGCTTTAAGTAGGGCAAGCCAAACTCTCAAAGACACCAGGAAAGCAGCTGGCAAGAAGGGGCTGTCAGTGTGCAGAAGGGGATGCAGAACTTCAGAGTGTTTCTCGTTCCAGGGAAAACTACTGCACTCCCGgctctgcagaaacacacacaaggcCAAAGAGCAGATgagagtgacacacacacacacacacacacaaacacacactcttcaaGTGCGACACCCCAAACATCCATATAAAGGCCAGCGGAGTCTGTTCCTACACTTCTCACTCACAGCCTTAAAGGTCAGCTATGTCCAAGTCCTAGCATTTACggatcacaaacacacacacataggcctAAACCTaccaacacacacatgcaagcacgTTCGCCGTGGGGTTGTGACCatagcttgtttgtttatttattcatgcacttGAAGTCTCTGTCAGCAGACCGCTTCTCCTCTGCAGGAGGTGAACTGGAGGATTTGCAATGTTCTCCGATCTGATTAGCAGGGAATGTCATGTGACAGCACACGGATTATCTTGTTCTGGTATGAGAGGACTAAATGTGGAAAGGTACTTTAGAGCCTTAATTCCAACGTGTAATATTTCATAATGTCGTACACGCGGGTCTCAGACTGGATAACTGTTGTCAGGTAGGCGCTTCACAAAGCCTGAGACTTCATTAATCCAGGTCTCTGCGAGTTCctttgaaatcatttaaattcCCTTCAACTCTTTCTGTCTTTTTCGGTGGTTGGAAACTTCCAGTGATAAATAATTAATGCTCGACTCTTTCGTTTTCTGCCCTCGCTTTCTTTCTTTGAGGTGTGAGGTAAGCTAAATACACCGGTGGGTTCACAAAGGTAAAGCTTGAGGTAGCTTAAGCGTGACTGCGAGAGATCGGGATCATTTTTATGTGCCGTTTGATCTGTGATGGACCCTGCATACGCTCGCTAATTACGATGGGCTGAGACAGTGTCATATCGACCACCCAGAGCTCTCATCACctctgtgagagagagaaagagagagaaagagaaatagagagagagttCTAATCAGCTGCCTCACACCTTCACTTCACACATCTCACACAGCAACACTCTCTCGTTTTGGGAAAAATCAGCCATTTATTTACCTCATTGGCTTTGTTTGCTTGGAAGAAAAGCATTCTGTGGCTTCGTATTTAAACACTATAATGCTTGTCTCACACCACACATGGACTAAATGACACACTTTTATTGCTGTATTAACAGGTAGCATAATTCACAATGGTACAAAGCATGCACTGTAGTTTCTTGTAACATAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000194586

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046377 lncRNA downstream 32677 22969054 ~ 22992203 (-) False XLOC_023448
TCONS_00047183 lncRNA downstream 85742 22922768 ~ 22939138 (-) False XLOC_023448
TCONS_00046857 lncRNA downstream 101819 22878941 ~ 22923061 (-) False XLOC_023448
TCONS_00046856 lncRNA downstream 101819 22878941 ~ 22923061 (-) False XLOC_023448
TCONS_00046376 lncRNA downstream 268371 22750958 ~ 22756509 (-) True XLOC_023447
TCONS_00047185 lncRNA upstream 34028 23113605 ~ 23178019 (-) False XLOC_023448
TCONS_00047186 lncRNA upstream 34028 23113605 ~ 23193673 (-) False XLOC_023448
TCONS_00046380 lncRNA upstream 34037 23113614 ~ 23151438 (-) False XLOC_023448
TCONS_00047187 lncRNA upstream 66170 23145747 ~ 23218030 (-) False XLOC_023448
TCONS_00046381 lncRNA upstream 70796 23150373 ~ 23175936 (-) False XLOC_023448
TCONS_00046375 mRNA downstream 268314 22741533 ~ 22756566 (-) False XLOC_023447
TCONS_00046374 mRNA downstream 268372 22740543 ~ 22756508 (-) False XLOC_023447
TCONS_00046368 mRNA downstream 322863 22118804 ~ 22702017 (-) False XLOC_023444
TCONS_00046369 mRNA downstream 490921 22122237 ~ 22533959 (-) False XLOC_023444
TCONS_00046364 mRNA downstream 921295 22070290 ~ 22103585 (-) False XLOC_023443
TCONS_00046384 mRNA upstream 161867 23241444 ~ 23323526 (-) False XLOC_023449
TCONS_00046383 mRNA upstream 161867 23241444 ~ 23323526 (-) False XLOC_023449
TCONS_00046385 mRNA upstream 162737 23242314 ~ 23320223 (-) True XLOC_023449
TCONS_00046390 mRNA upstream 567067 23646644 ~ 23671709 (-) False XLOC_023452
TCONS_00046391 mRNA upstream 568209 23647786 ~ 23671383 (-) False XLOC_023452
TCONS_00046372 other downstream 652780 22371986 ~ 22372100 (-) True XLOC_023446
TCONS_00046371 other downstream 715822 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046365 other downstream 927117 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046358 other downstream 1056764 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046357 other downstream 1061712 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046386 other upstream 193665 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046400 other upstream 891479 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046409 other upstream 1023144 24102721 ~ 24118395 (-) False XLOC_023462
TCONS_00046414 other upstream 1056325 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other upstream 1056351 24135928 ~ 24146875 (-) True XLOC_023462

Expression Profile

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