RNA id: TCONS_00004458


Basic Information

Item Value
RNA id TCONS_00004458
length 1620
RNA type mRNA
GC content 0.46
exon number 9
gene id XLOC_002349
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 39199547 ~ 39207900 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTATCAAGGACTCGATCCTGGGCATTGGAACCATCTCCAAACTCGATGCTCGGATTCAGCAGAAGCGAGAGGAGCAGAGGAGGCGCAGGTCGTCTGGAGCTCTGGCGATGAGACGAGCTCAAAGCGAAGAACGAAAACAAGACAGTGAACCCAAACTAGTAAGTCGAATTTTCCAGTGCTGTGCCTGGAATGGAGGTGTATTTTGGCTAAGCCTGTTCCTGTTTTATCGAGTGTTTATCCCGCTGCTGCAGTCTCTCACTGCTAGAATTATAGGTGACCCTTCGCTGCATGGGAATGTGTGGTCGTGGCTGGAGTTCATTCTGACATCTGTATTCAGTGCTCTCTGGGTTTTACCGCTATTTGTGCTTAGCAAGATAGTCAACGCCATTTGGTTTCAGGACATTGCTGATCTGGCGTTTGAAGTGTCTGGACGTAAAGCTCAACCTTTTCCCAGCGTCAGTAAGATCATCGCAGACATGCTCTTCAATCTTCTGCTCCAGGCTCTCTTCCTGATTCAGGGATGGATTGTGAGTCTCTTTCCCATCGATGCTATTGGTCAGCTGGTCAGTCTCCTGCACATGTCTCTGCTCTACTCGCTTTACTGCTTCGAATATCGCTGGTTTAATCACGGAATTGAAATGCACCAAAGGCTGTCAAACATCGAGAGGAACTGGCCGTATTATTTTGGCTTCGGTTTGCCCATGGCTCTACTGACCGCTCTGCCCTCTTCATACATCATAAGCGGTTGTTTGTTCTCCATTCTCTTCCCGCTCTTCATCATCAGCGCTAATGAAGCAAAGACCCCAGTCAAGCTCTACCACTTCCAGCTCCGGCTCTTTTCCCTGGTCGTCCTCATCAGTAACAAACTGTTCCACAAGACGGTGAATCTGCAGAGCTCCCTCAGCACCTCCGCGTCCACAGAGAAGCTGCCGTCTCCTCACGTGTCCCCGACCCGCCAGCGACCTTTACCCCCTCAGTGACCTCTTCAGGATTCACCTCTCGCTCTGAAAGGCGGGAAAACGATCCATTACGCACTCTCTGCATTTGAAAGCGTGAGTCTGTGCTCTTCTGGACGAGTTGGTAATGTGAATCAAGGTCATGATTCTCGGtgtgattttaaattttttttttttctcggacTGATTTTGTACCCATTACGTGCCATTTGGGTGATTTGTAGAGACGGCACAAAGACCTCAGCGTGCACATTTTCTGTGAATTGGCCCACCGTCCTCTTTTTAGGCCCTGTAGTCTACATTAGTCGACTCTTTTTATCTGTTTATGGCcttctttttaattttatgtacTTTTTTGAGGCTCAGACACGCGAGAGAGTGTATTTATCAATGAACACTAAACTCTATGAAGAAAAAAGTTCCTGATGGTTTACTTTCCTGCACTGACAACTGATCTAGAGTCAAAAGGATCAATTTTAAAGCCCTCTTTGAGCAGTAGATGTTTCTTGATATGAAAGTTATGAgttatcggtaacactttacaatatggggACACTTGGTTAATGTATGTTCTAACATACATGAATAAagtttgtacagcatttattagttATAGTTCATGGTTTACTAATGGGATTAGTTagtaaaagggatagttcactt

Function

GO:

id name namespace
GO:0016236 macroautophagy biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04115 p53 signaling pathway

ZFIN:

id description
ZDB-GENE-050417-457 Predicted to be involved in macroautophagy. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human EI24 (EI24 autophagy associated transmembrane protein).

Ensembl:

ensembl_id ENSDART00000075943

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004454 lncRNA upstream 111694 39084012 ~ 39087853 (+) True XLOC_002346
TCONS_00004449 lncRNA upstream 439103 38749266 ~ 38760444 (+) False XLOC_002344
TCONS_00005933 lncRNA upstream 440338 38749366 ~ 38759209 (+) True XLOC_002344
TCONS_00005729 lncRNA upstream 448035 38749352 ~ 38751512 (+) False XLOC_002344
TCONS_00005932 lncRNA upstream 766338 38432338 ~ 38433209 (+) True XLOC_002332
TCONS_00004466 lncRNA downstream 76508 39283996 ~ 39285617 (+) True XLOC_002352
TCONS_00005730 lncRNA downstream 121814 39329302 ~ 39393816 (+) True XLOC_002354
TCONS_00005731 lncRNA downstream 573073 39780561 ~ 39780849 (+) True XLOC_002357
TCONS_00005934 lncRNA downstream 701650 39909138 ~ 39917508 (+) True XLOC_002359
TCONS_00005935 lncRNA downstream 914886 40122374 ~ 40198832 (+) False XLOC_002361
TCONS_00004457 mRNA upstream 20210 39164638 ~ 39179337 (+) True XLOC_002348
TCONS_00004455 mRNA upstream 76334 39091353 ~ 39123213 (+) False XLOC_002347
TCONS_00004456 mRNA upstream 76427 39091716 ~ 39123120 (+) True XLOC_002347
TCONS_00004451 mRNA upstream 225102 38775959 ~ 38974445 (+) False XLOC_002345
TCONS_00004450 mRNA upstream 241272 38775408 ~ 38958275 (+) False XLOC_002345
TCONS_00004460 mRNA downstream 5113 39212601 ~ 39234155 (+) False XLOC_002350
TCONS_00004461 mRNA downstream 5410 39212898 ~ 39231403 (+) True XLOC_002350
TCONS_00004462 mRNA downstream 41423 39248911 ~ 39273031 (+) False XLOC_002351
TCONS_00004463 mRNA downstream 41547 39249035 ~ 39267438 (+) False XLOC_002351
TCONS_00004464 mRNA downstream 56339 39263827 ~ 39267444 (+) True XLOC_002351
TCONS_00004447 other upstream 515767 38683666 ~ 38683780 (+) True XLOC_002342
TCONS_00004441 other upstream 651342 38548089 ~ 38548205 (+) True XLOC_002336
TCONS_00004438 other upstream 710718 38488708 ~ 38488829 (+) True XLOC_002333
TCONS_00004421 other upstream 2051763 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004415 other upstream 2238857 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004472 other downstream 484889 39692377 ~ 39699487 (+) True XLOC_002355
TCONS_00004473 other downstream 553266 39760754 ~ 39760879 (+) True XLOC_002356
TCONS_00004486 other downstream 1343242 40550730 ~ 40550954 (+) True XLOC_002366
TCONS_00004487 other downstream 1347429 40554917 ~ 40555131 (+) True XLOC_002367
TCONS_00004493 other downstream 1392447 40599935 ~ 40600502 (+) True XLOC_002373

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000197_00278780_00283095.mRNA True 1782 mRNA 0.46 10 CI01000197 278475 ~ 283549 (+)
bowfin (Amia calva) AMCG00004474 True 1014 mRNA 0.56 9 CM030121.1 50673093 ~ 50678350 (+)