RNA id: TCONS_00046389


Basic Information

Item Value
RNA id TCONS_00046389
length 1010
lncRNA type lincRNA
GC content 0.36
exon number 2
gene id XLOC_023451
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 23383112 ~ 23642905 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAtatcggtgagcaaatcaaggcaaaaacaatAGTATAACTTCATTCTATCAAAAATGagggttttgtttttactgtaatcagttcataataaaatgcaaaaaaacaaaacaaaaaaaaacatgctgcattagGCCTAATGTAAAGCaatgtttagttatttttaaacattattaaataaattaggaaattacccatggcaactataataaccttcggcccactagccttaatcaagtttggtttttggcctttcataagaaaaagtttgggcatccaggttctaaaatattttcagaaataGCAAACGTTTATTGTAGGCGTGTTCTTAGTTTCTGGTGTTGTCCAATTAGACAGCTCGGCTAATTAATCTCAAATGTTAGGCTAGgctatttcaaatgtattttcagACAAACAAATTCGATAAAGATGTAATTAGAATTTGTGAAATTATTGTAAATTACTTTATTCTTCGCTCGCATTTCCTAATAAGTTTAAACGGAAGTGAAGAGGCAGCCCAACGTTACTTTATCTGAGGCCTAACTCGTTTGTTTACATAAGCTAGCATGTTGTACATTTCTGACACACGAGATAAAGTCGGGATTTTCTAAACATATTTCTTCAACGTCACTGTGGAAAGTCGGCGAAAGTGAAGTGTACACAGCGTGCTTTCTGTGGATGGCCTGCGTGTCTTCAGCACCGGCACAATCCTCTAAGGACCTGGCCTGACTCATCTGCGTGTGTGACAGGTAAGAAAAGATACCAAACAACTCACAGTAAGACAAGCAGAGAGCTGCCCTGCACAGCGCcctatttttttttccccctttcttTTTTGCGGCGACTAGATATTCATTTTCACACCTCACTTCTCCATATTTATGATTGCCCAtgagaacattttttatttatgttgactTCTTTCATAAACTGGACAgcggtttctttttttttctctctttctccatGTGTGTCAAAACAATCTCTGATTTATAATTTATGTGATTTATG

Function

GO:

id name namespace
GO:0034448 EGO complex cellular_component
GO:1990131 Gtr1-Gtr2 GTPase complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000194380

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047187 lncRNA downstream 381751 23145747 ~ 23218030 (-) False XLOC_023448
TCONS_00047186 lncRNA downstream 406108 23113605 ~ 23193673 (-) False XLOC_023448
TCONS_00047185 lncRNA downstream 421762 23113605 ~ 23178019 (-) False XLOC_023448
TCONS_00046381 lncRNA downstream 423845 23150373 ~ 23175936 (-) False XLOC_023448
TCONS_00046382 lncRNA downstream 445395 23151383 ~ 23154386 (-) True XLOC_023448
TCONS_00046859 lncRNA upstream 105430 23748335 ~ 23752575 (-) False XLOC_023454
TCONS_00046860 lncRNA upstream 112329 23755234 ~ 23757297 (-) True XLOC_023454
TCONS_00047192 lncRNA upstream 452411 24095316 ~ 24098874 (-) False XLOC_023461
TCONS_00047193 lncRNA upstream 452411 24095316 ~ 24098879 (-) True XLOC_023461
TCONS_00046410 lncRNA upstream 468317 24111222 ~ 24114884 (-) False XLOC_023462
TCONS_00046384 mRNA downstream 276255 23241444 ~ 23323526 (-) False XLOC_023449
TCONS_00046383 mRNA downstream 276255 23241444 ~ 23323526 (-) False XLOC_023449
TCONS_00046385 mRNA downstream 279558 23242314 ~ 23320223 (-) True XLOC_023449
TCONS_00046375 mRNA downstream 843215 22741533 ~ 22756566 (-) False XLOC_023447
TCONS_00046374 mRNA downstream 843273 22740543 ~ 22756508 (-) False XLOC_023447
TCONS_00046390 mRNA upstream 3739 23646644 ~ 23671709 (-) False XLOC_023452
TCONS_00046391 mRNA upstream 4881 23647786 ~ 23671383 (-) False XLOC_023452
TCONS_00046392 mRNA upstream 4881 23647786 ~ 23675446 (-) True XLOC_023452
TCONS_00046394 mRNA upstream 44505 23687410 ~ 23716097 (-) False XLOC_023453
TCONS_00046393 mRNA upstream 44505 23687410 ~ 23716097 (-) True XLOC_023453
TCONS_00046386 other downstream 326422 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046372 other downstream 1227681 22371986 ~ 22372100 (-) True XLOC_023446
TCONS_00046371 other downstream 1290723 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046365 other downstream 1502018 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046358 other downstream 1631665 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046400 other upstream 328151 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046409 other upstream 459816 24102721 ~ 24118395 (-) False XLOC_023462
TCONS_00046414 other upstream 492997 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other upstream 493023 24135928 ~ 24146875 (-) True XLOC_023462
TCONS_00046441 other upstream 1365412 25008317 ~ 25024023 (-) False XLOC_023476

Expression Profile

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