RNA id: TCONS_00046390


Basic Information

Item Value
RNA id TCONS_00046390
length 3325
RNA type mRNA
GC content 0.42
exon number 10
gene id XLOC_023452
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 23646644 ~ 23675446 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGCATGGAAAAACCCTACTGATTTAAAACAGAAGTTCTGTTTGTTGAAATGTAAGTTCCTAGTTCTCCTACATGCATTAAGAAGGTAATAATGCTGCCATATTTTAGTTCTGACATGGCACATTACTTTATAAGAGTGTCACTTTACCTAAGAATCAGGCCTGTTTGTTGGCCTGCACCAATAAAACCTTCTTGTTCCTTTCTGGAACAAATGGGGAATACTATTATCTCTTTATCCTTCTGATAAGTATAGGATAAAGCGAGAGGAGATAAGTTCTGCGCAAAAAGGTGAGGAGTCTTGGCCAAGGCTCCTCCCTTGTCTTAGAAGACGACAAATCAGCATTCTGAAGAGATGGTCAACCTAAGGCTGCCCTCACTTCTCTCTCCCAGAGACACTGTCCCAGGACGACTTTAAGTAGAGATAGCCAGGCAGGGATGAAGTTTTCTCCAACTCCTCTCCCTAAATCCTTGTTGGACATGGATGTAGCCAATTACTGCGAGGGCCTGGACCCGACCTATAGCACACTAGGCTTTGAGAACGCAGAGGTGCTTTATTGTGGTGAAAACATGCCGACAGAGCCCAACATCAGTCAAGGAGAAAATGGCGTGAGCTCCAACTGCGCGATCTGTGGGGACAAAGCCACAGGTAAACATTATGGCGCCTCCAGCTGTGACGGATGCAAAGGCTTCTTCCGCCGCAGTATCAGGAAGAGCCATGTCTACTCTTGCAGgttTAATCGTCAATGTGTGGTCGATAAAGACAAAAGGAACCAGTGTCGTTTTTGCAGACTTCACAAATGCTTTCGAGCTGGAATGAAGAAAGAAGCTGTTCAGAATGAGCGGGATCGAATCAGCTCACGGAGGAACATACAGGACTCACATGACCTGCCGCCAATCACAGCCCTCGCTCACGCTGAAGCACTTTCACAGCAGCAGATCACGGCCGCCAGTCCAATGGGCCCTGCTGATGTTTCAGAGAAAAAATCAGCCACTATCAGTGACGTCTGTGAGTCTATGAAGCAACAGCTGCTTGTTCTGGTAGAGTGGGCTAAATACATCCCAGCCTTCGGCGAATTGCCACTTGATGACCAGGTTAGTTTATTACGAGCTCATGCTGGCGAGCATCTTCTGCTTGGTGTGGCTAAGAGGTCAATGTCATACAAAGACCTCTTGCTTTTAGGTAATGGCTGTGTCATCCACCGAAACTGCCCTGAGCCGGAGATAGGCCGCGTATCTAACAGAGTCTTGGATGAACTAGTTTTACCTTTCCAGGACATCCAAATTGACGACAATGAATACGCCGCTCTGAAGGCCATTGTATTCTTCGACCCTGACGCCAAAAGCTTAAGAGACCCATCTAAGATCAAGGCGATGCGTTATCAGGTTCAGATGAGCCTGGAAGACTACATTAATGACCGGCAGTATGATTCACGCGGGCGATTCGGGGAGCTTCTACTGCTGCTTCCGACTCTGCAAAGCATCACCTGGCAGATGATTGAGCAGCTACAGTTTATCAAGCTCTTTGGTCTGGCTAAGATTGATAACCTGCTGCAGGAGATGCTTCTCGGGGGTCTAACCACAGAGCAACCTCACTTACATCACAATGGTCACCCTCAGATTCCCATAACAGGACAGACTATTGTCATTAGCTCCATACCAGGACCTGCACATCCACAGATGGcaTCCCCAGAAACCCCTATTCCATCCCCCACTTCAGTACAGAACCAGGAGGTCTTCAAACCTTCTGGCAGCCCTGCTCTCCTGCTGCCTCCACAGACCATGCCAAACAGACCCTCTCCGGAGCCCCCGCTATGAGTCTCCTCTCTTGTGCAGGTGTGTTTGTAGATGTGTAAATGCTTCCCCACCTCCAGCGCTTCagaactttacaaaaaaaaaaaaatcaaatttactGTCAAAGTGGACCATCATGAATTGAAAAGTGATTGTTTCGTTTAGGATAGTTGGAGAGTTTTAGGTTTTATGTGGTTTCTGTTTAGCTGAATGCTGGTAACCTAGAGGATATGCATTTATTGGTGACAAAATATTGTCagttacaaaacatttttttattgtattaatgacaaataaatcaagaattaatttattaacaaaattatactgtaaaacattgaagaaatgttcatttgtggccttaaacacaataaaaaaattagtgcttgcattgtttttattaatgaatggattatgtattttgtgtgcttaattacttttttaatgtattttattgctTTTGGTGACCTGAAATCACAAATTTTTGAAAACGTTTTGAAGTTTTAGAGTGCAAGTGTCACACGTGGAGATCAAAGCAAGGAACAACACGAGGGTCCAGGTGCAGGTAAAATAAGATTATATTAAAGGCAATCAAGGTCAAACAAAAGTAGCTGGTACAAGAAGTGCAATccaaaaacattatcaaaaaaCAGACATTAAGTCAAAAATCTGGTGTGTGTGAGATGaagggatttgtagttcttaaCAGCATCTGTAGTTCACCAGCAATTTGTCAGGagtggatcgctggtgatcgtgacagcaAGCTTTCCAATATCCTTAATCCATGTGTTTTTGTGaaaaatgtaatatatgtaaatgtaaatataaaaaaatttaatatgcatgcttattgtacatgtatgtaacatctatacacactcattcacactcacactacggagaatttagcttacccagttcacctataccacatgtctttggacttgtgggggaaaccagagcacctgtaggaaacccatgcgaacatggggagaacatgcaaactccacacagaaacactaactgagccagccgaggcttaaaccagcgactttcttgctgtaaggcgaatgtgccacccactgtgccaccacatcgcctttattaaatataatattaaaaaacaaaacaaatgttgtaatttatgtttttcatGACAGGTGATAATATACATATACCATATATTATTTaacggcacggtggctcagtggtttgtacTGTCGTTtgcatgctggaatagttgtcggtttaATCCACTGTAACttctgataaatgagggactaagctgagggaaaatgaatgaattaatagatttttttaaaataaatatcatattAGAAATATGATAATGATACATCTGTTGataaatatattagaaatatgataagtatcattttattttttatgcctcTTTTTGCTCACAAAGGATACATCAATTTGACTgtcaaaaaaagtatttttaatgtaAGCTATTTCTGCATTCAGATATTCTTGTGAAGTTTTCAGTGTCCATTGAGTCTTCAGTGTGCC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko04950 Maturity onset diabetes of the young
ko03000 Transcription factors
ko03310 Nuclear receptors

ZFIN:

id description
ZDB-GENE-060929-100 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in anatomical structure development; cell differentiation; and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human HNF4G (hepatocyte nuclear factor 4 gamma).

Ensembl:

ensembl_id ENSDART00000164750

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046389 lncRNA downstream 3739 23599781 ~ 23642905 (-) True XLOC_023451
TCONS_00047189 lncRNA downstream 4018 23466434 ~ 23642626 (-) False XLOC_023451
TCONS_00047190 lncRNA downstream 4018 23501944 ~ 23642626 (-) False XLOC_023451
TCONS_00047191 lncRNA downstream 4018 23589475 ~ 23642626 (-) False XLOC_023451
TCONS_00046387 lncRNA downstream 13592 23589745 ~ 23633052 (-) False XLOC_023451
TCONS_00046859 lncRNA upstream 76626 23748335 ~ 23752575 (-) False XLOC_023454
TCONS_00046860 lncRNA upstream 83525 23755234 ~ 23757297 (-) True XLOC_023454
TCONS_00047192 lncRNA upstream 423607 24095316 ~ 24098874 (-) False XLOC_023461
TCONS_00047193 lncRNA upstream 423607 24095316 ~ 24098879 (-) True XLOC_023461
TCONS_00046410 lncRNA upstream 439513 24111222 ~ 24114884 (-) False XLOC_023462
TCONS_00046384 mRNA downstream 323118 23241444 ~ 23323526 (-) False XLOC_023449
TCONS_00046383 mRNA downstream 323118 23241444 ~ 23323526 (-) False XLOC_023449
TCONS_00046385 mRNA downstream 326421 23242314 ~ 23320223 (-) True XLOC_023449
TCONS_00046375 mRNA downstream 890078 22741533 ~ 22756566 (-) False XLOC_023447
TCONS_00046374 mRNA downstream 890136 22740543 ~ 22756508 (-) False XLOC_023447
TCONS_00046394 mRNA upstream 15701 23687410 ~ 23716097 (-) False XLOC_023453
TCONS_00046393 mRNA upstream 15701 23687410 ~ 23716097 (-) True XLOC_023453
TCONS_00046395 mRNA upstream 58199 23729908 ~ 23758003 (-) False XLOC_023454
TCONS_00046396 mRNA upstream 86801 23758510 ~ 23784701 (-) True XLOC_023455
TCONS_00046397 mRNA upstream 165810 23837519 ~ 23839647 (-) True XLOC_023456
TCONS_00046386 other downstream 373285 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046372 other downstream 1274544 22371986 ~ 22372100 (-) True XLOC_023446
TCONS_00046371 other downstream 1337586 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046365 other downstream 1548881 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046358 other downstream 1678528 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046400 other upstream 299347 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046409 other upstream 431012 24102721 ~ 24118395 (-) False XLOC_023462
TCONS_00046414 other upstream 464193 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other upstream 464219 24135928 ~ 24146875 (-) True XLOC_023462
TCONS_00046441 other upstream 1336608 25008317 ~ 25024023 (-) False XLOC_023476

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_05803227_05816159.mRNA True 2035 mRNA 0.47 10 CI01000018 5802909 ~ 5816493 (-)