RNA id: TCONS_00046393


Basic Information

Item Value
RNA id TCONS_00046393
length 3476
RNA type mRNA
GC content 0.44
exon number 29
gene id XLOC_023453
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 23687410 ~ 23716097 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGTTTAGCAGGTCAGAACTCAAAGATACAAAAGCACcttaaaacagattaaaagcCCATGCGCGGGTTTTGCTTCAGGGCGTTTCGTTCCCGCGCACTCCTGCTCTGCCCGGTGCTTTCATTGACAGATTAACGTTACATGATACCTTTATATGTCTTCTGTCCACCTTCAACTAATCAGCTTTATGAATCTGTTTCAATCTCAAATTAGCAGAAAGTGTCAAAGGTCTGACTGGAGACAAGATGAAGATGGTGACATTCTTCGTTGTGGGACTCATTGTGCATGTAGTCTTCTTTCTCTGCatatttgacatttatttcaCATCTCCTCTTGTCCATGGAATGACTCCTCAGCGGGTCTCTCTGCCCCCTCCGGCCAAGCGCCTGGTGCTGTTTGTGGCAGATGGTTTGAGGGCCGACAGCCTCTTTAAGCCAGACGACAGTGGGACATCCAGGGCTCCTTACCTAAGGAGTGTGATTGAAGAGGGCGGCACATGGGGAGTTTCACACACACGGGTCCCTACTGAATCACGCCCAGGACATGTCGCTCTAATAGCAGGCTTTTATGAGGACGTTAGTGCTGTTGCCAAGGGCTGGAAGGAGAATCCAGTGGAGTTTGATTCTGTCTTTAATGAGAGCAGATATACCTGGTGTTGGGGAAGCCCTGATATATTGCCAATGTTTGCTAAAGGTGCCACTGGAGACCATGTCTACACTCACACTTACCCTCCAGAGCGAGAGGACTTCGCCTCCACTGATGCTTCCAGACTCGACACATGGGTGTTTGATGAAGTGAAGGATTTTCTCACTGCTGCCAAAAGCAATGAAACTTTACTAAAGAAGTTACATGAAGAACAAAACGTGTTTTTCCTTCATCTACTGGGGATTGACACCAATGGTCATGCCCACCGGCCCATGTCAAAGGAATGTCTAGAGAACATTGGTCTGGTTGATGCTGGTGTCGCTGACATTGTCACTGTGATGGATGACTTTTATGGCCATGATGGAAAAACGGCTTATGTTTTTACTTCTGACCATGGCATGACAAATTGGGGATCTCACGGTGCAGGACATCCCTCGGAGACTCTGACCCCGCTGGTAGTGTGGGGCGCTGGGGTTCAGAAGGCACAATGGGAGACCTCTCAGAAATATGAGGATAATTATTTAAAAGAATGGGGGTTAGAGAGCTACAGGAGAGTGGACGTCAATCAGGCTGATATTGCCCCACTAATGTCATCTCTTATAGGCATTCCCTTTCCTTTGAACTCTGTGGGGGTTTTACCGCTGAGTTACCTGAATAACAGCCAGCACTTTAAGGCTGAGAGCATGTATGCAAATGCTATTCAGATCTTGGAGCAGTTCAGGgTAAAATTggcacagaagaaagaaacaacgATATCGTTTTTGTTCACACCATACCAgCCCCTTACTGACTCTAAACAAGTGGATTTCATTCGTCAGGCAAGAGATTTGATCCAAAAAGGACGTTTTGACGAAGCAATTGTCTATTGTAAAGATCTGATCGCTCAGGCAATGGAGGGCTTGTCATATTATCACACATATGATCGTCTGTTTCTTGGAAGCAGTGTGGTCCTGGGTTTTATTGGTTGGACCTCATATGTGGTTTTATACATCCTGAAAACTCATGCTAGCCTACGCAAACCTCCAACTAACACGTCCATGGTGACTGAAAGGCTTCTGGGATGGGGATTTCTGTGCGTTGGTTTGCTGATGGCTTTGTTCTTGTTGGTTCAGTCCAGTCCTTGGTCGTACTACATCTACAGTTTAATGCCTGTGGCGGTGTGGTATGCTGTATTGAAAGAGTTTAAAACTCTTGTTGGTCTGGTTCGCTCGATTCCGTCATTACCACTCACCAAATGCTTCGGATATTTTGTACTGGTTGCATTTGGAATAGAGTTACTAgtcaTGAGTTTTTTTTATCGGGCCATGTTGTCCTTGGGCCTTGTGGTGTTGGCACTATGGCCTGTGGTTTCTGGCTTCTATACAAAAGCCAAGTTCAAGTCTCTGAGCTGGACGCTGAGTTGTCTCTCACTGGCTGTGTTTCCCCTGTTGCCTGTTGTGGGACGGGAACCCAACATAAACTATGTGATTAGTGCTGGAGGGTTGATCCTCTTTAACTCGTCCTCATTCCTCTGGTCTTCATGGAGAGACTCTCCTCTGATGCGAAGGGATCGTCAGCTCTTCATTTTCCAGATGGTGCAGGTGGCGCTGTGTGCTTATACTCTGACCAGCACCCACTCTAGTCTGCAGCTGAAGCAAGGCCTGCCGATCTTCAACCAGCTAGTTAGCTGGAGCACACTAGtttcctcCTTTTTGATACCATTGTTGAGTTCCACCAGACTCTTTCACAGACTTCTGAGTATCCTGATGTCATTGACGTGTGTCTACCTTCTCCTGAGTACAggGCATGAGGCTCTTTTTCCTCTGATGCTGTCGTGGCTTATGCTTGCATGGATTCACATTGAGCAGGAAGCCATGTCCAGACAAGGAAGTTCAAATCGAAATGAGctCTCCTGCATTGATTTTGCCGAAAATATCGACATCACCAAAGTCCGTCAGCTGAGATTGGACGACATTCGGAAATCTTACTTTTTTGTGTTTTTCATAATAATTGCATTCTTCGGCTGTGGAAATATTGCATCTATCAACAGTTTTGATCCAGCGTCAGTGTATTGCTTTCTGACCGTCTTCAATCCTTTCATCATGGGTGGTCTGCTGATGTGGAAGGTTTTAATCCCATTTGTAATTGTGATGTGCACATTCGAAAGCATTCAAGTGTCAACGCAGCTCTCCTCACGAAGTCTTTTCCTCATCGTACTTGTCATATCAGACTTGATGGCATTGCACTTCTTCTTCTTAGTTAAAGATTATGGAAGCTGGCTTGACATAGGGACTAGCATCAGTCATTATGTCATCGTAATGTCCATGACCATCTTCCTCATGTTGCTGAGTGTCATGACGCACATATTAACATCCAAGAAGATCCTCCTTGGACGGAGCCGAAAGATGCACTTTAGGTGACCCCCTCGTACCTGGATCTCCCCGTCTCATTGTTTacaaggtgcaaaaaaaaaaatcattgaacaTTGAACTGCACAATGATCTGACTGGTGTGGGGTCTTCCTGTTACTGGGAATTTCTTAACATCAGTATTGCTTAAGACAAATGACTTTGCATCATCCTGTCTTAAAAGCAAGAAACGCTCTGGTGTACTAATGTTTaggatttatgtttttaaatgtcagtgggaatttttacaataatttaaatgtactgtatGGTTTATGCCAAAGGACAGGAAAGGAATGTTACTGTACGGATGTGTCAACTGATATTAACTTGGATCTAATCCTTGTAAGGTATAACagtaaatgtgttatttgtttaatacagtattttattaatgtgatgtaaatatgttaaataatttattaacattaaacttataaattaaa

Function

GO:

id name namespace
GO:0006506 GPI anchor biosynthetic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0051377 mannose-ethanolamine phosphotransferase activity molecular_function

KEGG:

id description
ko00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis

ZFIN:

id description
ZDB-GENE-080204-114 Predicted to enable mannose-ethanolamine phosphotransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in multiple congenital anomalies-hypotonia-seizures syndrome 1. Orthologous to human PIGN (phosphatidylinositol glycan anchor biosynthesis class N).

Ensembl:

ensembl_id ENSDART00000084954

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046389 lncRNA downstream 44505 23599781 ~ 23642905 (-) True XLOC_023451
TCONS_00047190 lncRNA downstream 44784 23501944 ~ 23642626 (-) False XLOC_023451
TCONS_00046859 lncRNA upstream 32238 23748335 ~ 23752575 (-) False XLOC_023454
TCONS_00046860 lncRNA upstream 39137 23755234 ~ 23757297 (-) True XLOC_023454
TCONS_00047192 lncRNA upstream 379219 24095316 ~ 24098874 (-) False XLOC_023461
TCONS_00047193 lncRNA upstream 379219 24095316 ~ 24098879 (-) True XLOC_023461
TCONS_00046410 lncRNA upstream 395125 24111222 ~ 24114884 (-) False XLOC_023462
TCONS_00046392 mRNA downstream 11964 23647786 ~ 23675446 (-) True XLOC_023452
TCONS_00046390 mRNA downstream 15701 23646644 ~ 23671709 (-) False XLOC_023452
TCONS_00046391 mRNA downstream 16027 23647786 ~ 23671383 (-) False XLOC_023452
TCONS_00046383 mRNA downstream 363884 23241444 ~ 23323526 (-) False XLOC_023449
TCONS_00046395 mRNA upstream 13811 23729908 ~ 23758003 (-) False XLOC_023454
TCONS_00046396 mRNA upstream 42413 23758510 ~ 23784701 (-) True XLOC_023455
TCONS_00046397 mRNA upstream 121422 23837519 ~ 23839647 (-) True XLOC_023456
TCONS_00046398 mRNA upstream 220732 23936829 ~ 23942722 (-) True XLOC_023457
TCONS_00046399 mRNA upstream 254959 23971056 ~ 23974559 (-) False XLOC_023458
TCONS_00046386 other downstream 414051 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046372 other downstream 1315310 22371986 ~ 22372100 (-) True XLOC_023446
TCONS_00046371 other downstream 1378352 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046365 other downstream 1589647 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046358 other downstream 1719294 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046400 other upstream 254959 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046409 other upstream 386624 24102721 ~ 24118395 (-) False XLOC_023462
TCONS_00046414 other upstream 419805 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other upstream 419831 24135928 ~ 24146875 (-) True XLOC_023462
TCONS_00046441 other upstream 1292220 25008317 ~ 25024023 (-) False XLOC_023476

Expression Profile

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