RNA id: TCONS_00046395


Basic Information

Item Value
RNA id TCONS_00046395
length 2608
RNA type mRNA
GC content 0.45
exon number 15
gene id XLOC_023454
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 23729908 ~ 23758003 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAATAAACCTCACTGTATATTGTAAATGAAAAGTATTGAAATTGAAATAAGACAAATTGATAAAGTCCAATAAGAAACACGTCCCAATCTCGAAACAATTGCCTGTAGGgtcataatttatttacattagatATTGTGTGTTTAAACAATTAGTGAGGAACATATTAACTGTTTATAAGCAGTAAATTGTAGTTCAAATGTTTCTTAATTCTCTTAATTTACTACTGGCGCGTCTAATTTGCATAAGTTGTAATAAAGCGCGAGCTAATGCTGGCTAGAGTAGAGAGGAGGACTGGGCAATTTCGGTGACATGGAGGCTTTACGTTCTCTGAAAGAAGCGATAATAGTTTATTTAGATAGAAGTGGTGGGTTACGTAAATTCATCAAAGACTGCAATGACTTTAAAGGTGCACAGCAGATGGAGGCCGTATATCGCTTCAGTTTGGATGTGAATCCCTCAGATGTCCTTCAACTGGACGCTTTGCTGGGAGACTGTATACTACACGACCCCATCAAAGCAGTTTCACTCTTTCAGTCAGTTTGTTTTCTGTCCATAAAGACCCTGTCACTTATTGACCACATAGAAACAGAAAGCCAGgttaatgttgttttaaagccaACCCACTTGCCACCTTTTCCCAACTATTGTCTGGACCTCTCTGAGTTTCCCCGTGGGTATGGTCCAATGAGACCTTTAGCTTTGCAGGGCCTCGTAATTGCCATGACACGTGTCACCAAATACACACAAGGGGCCAGATTTCTCTGCTCAGAGGACGCATGCCCTTGCTCCAGAGGGTTTCATCATATCAGAGTTCATGCACCAGGTGCCACAGAGTCTGCCACAGTAAGGAATGACTTTACCTGCTTTCTCTGCTTTTCTCCACTGAAGGAGGATGTGAAGTCTCGGGTTTTAGGAGaGAAGCAACTAGTTGAACTCATTCATGTCCGAGCAGTGGATGTTTTAGGAGTTCATGATCCTGCATCCTTAAGATATCAATCTGTTACCCTTTTTCTAAGAGATGAACTCTGTAACTCCATGAGAATCGGCCATCTGTACCGAGTTGTTGGGATTCCTGCTCATGTGCACCAGTGGCCTAATGTAACCTGGAGCGTAGAGGCTTGCAGCGTCCAACCATGGATCCCCAAATGCCCCAGTCTGGTTAGCAACAACTTCCAGAACCTGCATACGGCCTCGGCATGTTCCCCGTGGAGATTTGCTGCCATTGTAGCCAACTCATTCGGCTCCCCGGTGATCCCACCTGGACTCTACAACACTTTAAAGTTGGGGCTTCTACTTAGCCTGCTGCAAACCGAAGATAATACAGACTCTCCCAATCATCTGGATGTGCTCGCTCTCACCAGTGACAGCCTTATCATTGACAGGTTGATGAGATATAGCCTGCAGTTGGCCTCGCGTGGCATTCATCATGCACTTACAGGAGAGCTTTTAGCATCTCTATCTAGAGATGAACATGGAGCAAGTACTGCCAACATTCATGCAGGTTCTGCTTTGCTGGCATCTGGAGGAGTCTGTCTGCTAGGAGACCTCACATGCTACAAGAAAGACAAGATGGACATGCTTCAGTCTGcTCTCGAAAGCAGAACAGTGTCTGTTTTCATTCCTGCAAAGAAATATGGTGATGATACAGACCAGCAGCTCTCTTTCCCCATCCAGTGTAACTTCTGGGCCTTAGTTGACATCGCTTCCCCCTCCAAGAGGACAGCCAGATGTGATAATGCACTGCTGGGTTCTGGGGAAATGGGCTCAGTTCCCCTTCAGCTTACAGGAGCATTTGGACTTGTAGTTCAGTGTCGCGAAACAAGCAACAATCATCCAATCCTATCCATGACAGTGCACACACTGAGACAGGCCATGTCGCCAGGAGAGCCTCTTTATCCTGCATGCATGCAGTTTACCACACAAGACTACAAAGAGCTCTTGGCTCATGCAAGACAATTGAAAGTGGACTTGAGTCTTGATGCTGAAAGGATGATCCATGGCTATTACATGGGAAGTCGCAGGTTTCGCTCAGACTCAACACAGAGATCCTCAGTAACTTCTATTAAACTCCTGATTGCACTGGCCCAAGCTCACGCTAAACTCAGTCTGAGAACAGAAGTTTTGGAGGAAGATGCAGTCATTGCAGTACTGCTGTGTGAGAGTTCAGTCACCCTAAAACATGGAGCCTCAGCACTCATCTTTCCACCCGATGCAGCATTTCCCTGTGCTCTCCATGACCTGGACTCCTTGAACCAGCGGGACCTTGAGTTGGAGGAACATCGCAAGCAGATCCTGAATTTTGTGCACACCTACGCACCCCACATAGAGGAATAAAAATCAAGGAAGTGAGAGCTGATATTGCCATGGCGACGCGACGCGAGGTCAATTTCCACGCGCCAGTGTTGATTCAGAGTTCAGATGCGGCGTGACACATTGTCAGCAGAAATGGTGAAAAGGTTTTAATTTGTTATGTTTGAGTTCTTTTCTATGTAATTTTAAAACACGTGTTGTTCGTTGCTGTATTGTTTTGATGCAAGAGAATGTTTTACTGAGGTCGTAAATATTCATTTGTTCTACAAAGTGCTTTAGTAGGAAAAGTAGGCTAT

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2568 Orthologous to human MCMDC2 (minichromosome maintenance domain containing 2).

Ensembl:

ensembl_id ENSDART00000178085

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046389 lncRNA downstream 87003 23599781 ~ 23642905 (-) True XLOC_023451
TCONS_00047190 lncRNA downstream 87282 23501944 ~ 23642626 (-) False XLOC_023451
TCONS_00047192 lncRNA upstream 337313 24095316 ~ 24098874 (-) False XLOC_023461
TCONS_00047193 lncRNA upstream 337313 24095316 ~ 24098879 (-) True XLOC_023461
TCONS_00046410 lncRNA upstream 353219 24111222 ~ 24114884 (-) False XLOC_023462
TCONS_00046418 lncRNA upstream 408967 24166970 ~ 24168462 (-) True XLOC_023463
TCONS_00046423 lncRNA upstream 658321 24416324 ~ 24451847 (-) False XLOC_023466
TCONS_00046394 mRNA downstream 13811 23687410 ~ 23716097 (-) False XLOC_023453
TCONS_00046393 mRNA downstream 13811 23687410 ~ 23716097 (-) True XLOC_023453
TCONS_00046392 mRNA downstream 54462 23647786 ~ 23675446 (-) True XLOC_023452
TCONS_00046390 mRNA downstream 58199 23646644 ~ 23671709 (-) False XLOC_023452
TCONS_00046391 mRNA downstream 58525 23647786 ~ 23671383 (-) False XLOC_023452
TCONS_00046396 mRNA upstream 507 23758510 ~ 23784701 (-) True XLOC_023455
TCONS_00046397 mRNA upstream 79516 23837519 ~ 23839647 (-) True XLOC_023456
TCONS_00046398 mRNA upstream 178826 23936829 ~ 23942722 (-) True XLOC_023457
TCONS_00046399 mRNA upstream 213053 23971056 ~ 23974559 (-) False XLOC_023458
TCONS_00046401 mRNA upstream 213055 23971058 ~ 23974559 (-) True XLOC_023458
TCONS_00046386 other downstream 456549 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046372 other downstream 1357808 22371986 ~ 22372100 (-) True XLOC_023446
TCONS_00046371 other downstream 1420850 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046365 other downstream 1632145 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046358 other downstream 1761792 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046400 other upstream 213053 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046409 other upstream 344718 24102721 ~ 24118395 (-) False XLOC_023462
TCONS_00046414 other upstream 377899 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other upstream 377925 24135928 ~ 24146875 (-) True XLOC_023462
TCONS_00046441 other upstream 1250314 25008317 ~ 25024023 (-) False XLOC_023476

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_05864737_05869576.mRNA True 2024 mRNA 0.46 11 CI01000018 5864455 ~ 5869576 (-)