RNA id: TCONS_00046859


Basic Information

Item Value
RNA id TCONS_00046859
length 953
lncRNA type sense_over
GC content 0.49
exon number 5
gene id XLOC_023454
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 23729908 ~ 23758003 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTGCTCCTGACTGCCGCTCACAGGCCCCAGTCTGGTTAGCAACAACTTCCAGAACCTGCATACGGCCTCGGCATGTTCCCCGTGGAGATTTGCTGCCATTGTAGCCAACTCATTCGGCTCCCCGGTGATCCCACCTGGACTCTACAACACTTTAAAGTTGGGGCTTCTACTTAGCCTGCTGCAAACCGAAGATAATACAGACTCTCCCAATCATCTGGATGTGCTCGCTCTCACCAGTGACAGCCTTATCATTGACAGGTTGATGAGATATAGCCTGCAGTTGGCCTCGCGTGGCATTCATCATGCACTTACAGGAGAGCTTTTAGCATCTCTATCTAGAGATGAACATGGAGCAAGTACTGCCAACATTCATGCAGGTTCTGCTTTGCTGGCATCTGGAGGAGTCTGTCTGCTAGGAGACCTCACATGCTACAAGAAAGACAAGATGGACATGCTTCAGTCTGcTCTCGAAAGCAGAACAGTGTCTGTTTTCATTCCTGCAAAGAAATATGGTGATGATACAGACCAGCAGCTCTCTTTCCCCATCCAGTGTAACTTCTGGGCCTTAGTTGACATCGCTTCCCCCTCCAAGAGGACAGCCAGATGTGATAATGCACTGCTGGGTTCTGGGGAAATGGGCTCAGTTCCCCTTCAGCTTACAGGAGCATTTGGACTTGTAGTTCAGTGTCGCGAAACAAGCAACAATCATCCAATCCTATCCATGACAGTGCACACACTGAGACAGGCCATGTCGCCAGGAGAGCCTCTTTATCCTGCATGCATGCAGTTTACCACACAAGACTACAAAGAGCTCTTGGCTCATGCAAGACAATTGAAAGTGGACTTGAGTCTTGATGCTGAAAGGATGATCCATGGCTATTACATGGGAAGTCGCAGGTTTCGCTCAGACTCAACACAGAGATCCTCAGTAACTTCTATTAAACTCCTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046389 lncRNA downstream 105430 23599781 ~ 23642905 (-) True XLOC_023451
TCONS_00047189 lncRNA downstream 105709 23466434 ~ 23642626 (-) False XLOC_023451
TCONS_00047190 lncRNA downstream 105709 23501944 ~ 23642626 (-) False XLOC_023451
TCONS_00047191 lncRNA downstream 105709 23589475 ~ 23642626 (-) False XLOC_023451
TCONS_00046387 lncRNA downstream 115283 23589745 ~ 23633052 (-) False XLOC_023451
TCONS_00046860 lncRNA upstream 2659 23755234 ~ 23757297 (-) True XLOC_023454
TCONS_00047192 lncRNA upstream 342741 24095316 ~ 24098874 (-) False XLOC_023461
TCONS_00047193 lncRNA upstream 342741 24095316 ~ 24098879 (-) True XLOC_023461
TCONS_00046410 lncRNA upstream 358647 24111222 ~ 24114884 (-) False XLOC_023462
TCONS_00046418 lncRNA upstream 414395 24166970 ~ 24168462 (-) True XLOC_023463
TCONS_00046394 mRNA downstream 32238 23687410 ~ 23716097 (-) False XLOC_023453
TCONS_00046393 mRNA downstream 32238 23687410 ~ 23716097 (-) True XLOC_023453
TCONS_00046392 mRNA downstream 72889 23647786 ~ 23675446 (-) True XLOC_023452
TCONS_00046390 mRNA downstream 76626 23646644 ~ 23671709 (-) False XLOC_023452
TCONS_00046391 mRNA downstream 76952 23647786 ~ 23671383 (-) False XLOC_023452
TCONS_00046396 mRNA upstream 5935 23758510 ~ 23784701 (-) True XLOC_023455
TCONS_00046397 mRNA upstream 84944 23837519 ~ 23839647 (-) True XLOC_023456
TCONS_00046398 mRNA upstream 184254 23936829 ~ 23942722 (-) True XLOC_023457
TCONS_00046399 mRNA upstream 218481 23971056 ~ 23974559 (-) False XLOC_023458
TCONS_00046401 mRNA upstream 218483 23971058 ~ 23974559 (-) True XLOC_023458
TCONS_00046386 other downstream 474976 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046372 other downstream 1376235 22371986 ~ 22372100 (-) True XLOC_023446
TCONS_00046371 other downstream 1439277 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046365 other downstream 1650572 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046358 other downstream 1780219 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046400 other upstream 218481 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046409 other upstream 350146 24102721 ~ 24118395 (-) False XLOC_023462
TCONS_00046414 other upstream 383327 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other upstream 383353 24135928 ~ 24146875 (-) True XLOC_023462
TCONS_00046441 other upstream 1255742 25008317 ~ 25024023 (-) False XLOC_023476

Expression Profile

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