RNA id: TCONS_00046396


Basic Information

Item Value
RNA id TCONS_00046396
length 2936
RNA type mRNA
GC content 0.41
exon number 17
gene id XLOC_023455
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 23758510 ~ 23784701 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGTGACTGATTGTTTCGGAACTTCGAAACAAACATCAGCGTGTCTGTCTTTCTCTCACGGGTGGCTCATCGGGAACATAATGAATGTCGGGGAGGACAAACTCTTTCAGTTCAGCCGGGTCAACATTTAGCGCCCAGAGACGCCGAGCTGGATTTTTGAATCGCTGGACTTCCTTTGCCTCCCGACACGTCACTGGAGTCAGTTGGATGGAAAGAGTGAAAAAATAAGGAGCCAGAATGGAAAGTTCCCATCAGAATCAGGTGTGCCAAAGAAGCAGGAAAGCTTTCTGAGGACCTGTTACGTTTATGAACGGTCACTTTTGAGATTCTGAGAGGATGGAAGAGCAACCTAGCTGTCCCAATGTTAGCATTCCATGCTATAATGAGCAGAGGGACAAGAAGAAACGCTATACTGTTTACAAAGTTATGGTCAGTGTTGGAAGGCATGAGTGGTTTGTGTTCCGGAGATATGCAGAATTTGACAAATTGTACAACACGTTGAAAAAACAATTTCCTGCGCTGAATTTGAAGATTCCTGCTAAGAGAATATTTGGCGACAATTTTGACCCagAGTTTATAAAACAGAGACGAGCGGGGTTACATGAGTTCATTCAGAGGATCGTGTCCCATTCACAGCTCTGCAGCCATCCCGATGTCAAAGTCTTTCTGCAGATGGACAAAGCCAAAAACTTCTCTGATGGCTCAGAGGATGAAGACGACAAGAGTAACTCTACCTCTAGAAACATTAACCTGGGGCCATCTGCAAATCCACATGCAAAGCCCACTGACTTTGACTTTCTTAAAGTCATAGGAAAGGGAAGCTTTGGGAAGGTTCTCCTTGCAAAGAGGAAACGGGATGGGAAGTGTTATGCCATCAAAGTCTTGCAAAAAAAGGTCATTCTAAACAGGAGAGAGCAAAAGCACATCATGGCTGAGCGCAATGTGTTGCTGAAGAATGTTAAACACCCCTTCCTGGTTGGCCTGCACTATTCCTTTCAGACAACGGACAAGCTATACTTTGTTCTGGATTTTGTCAATGGTGGAGAACTTTTCTTTCATCTCCAAAAAGAGCGGACCTTTCCTGAACCCAGAGCAAAGTTTTATATTGCGGAGATGGCGAGCGCTCTGGGTTACTTGCACTCTCTTAACATTGTTTACAGGGATTTAAAACCAGAAAATATCCTGCTGGACTCTCAAGGCCATATAGTCTTGACTGACTTTGGACTGTGTAAGGAGGGCATCTCTCAAGCAGACACAACAACCACATTTTGTGGAACACCTGAGTATCTAGCTCCAGAAGTACTCAGGAAACAACCCTATGATAACACTGTGGACTGGTGGTGTCTGGGTTCCGTGCTGTATGAAATGCTTTATGGACTGCCTCCGTTCTACAGCAGGGACACGCATGAGATGTATGACAACATTCTTCACAAGGAGCTTGTCATGCGGCCCGGGGCGTCCACAGCTGCGTGGTCCATCCTTCAGACCCTGCTGGAGAAAGACCACACCAGGAGGCTTGGCTACAGAGATGACTTTAATGAAGTCAAAGAACATGAATTTTTCTCATCTATTAACTGGTATGACCTTGAACAGAAAAAGCTTTCTCCTCCATTTAACCCTAGTGTGGAATCCCAGTATGACATCTCAAACTTTGATCCAGAGTTTACAGAGGAAACCGTGCCAAACTCTGTGTGCTTCTCATCAGGGCCGTCGATCGTCAATGCGAGTGTCATGGAAGCGGACGATGCCTTTCTGGGATTTTCTTACGCTCCGCCATCAGAAGATTCTTTCTTGTAAGGTTGGCGCTGCTAATGGCGATTTAAAGAGagctgcataaaaataaatatctgtgATCGCACTCTCTGACGAAAGGGAAGAATCTGCCTAGCATCATGTTTCCATCAGATGGTGTGGACCCTTGTGTTTCTTGACAGAAGCAGTGCATAAAGCTTTTGGGATGCAGGGTGTTTCaaactttatttttacatgtaaatAACATATCTTGTGTCACATTGAACGCCTTAAACTGAGAGTTTAGCTCAGGAGCTAAAGTGCTGATGTATTTTTCTTTGCTATGAATTATTTTCAAGGGCtgatgagaagaaaaaaaacaaacatccacTTTGACAACATTCCTTTTTTGTGCCCCAACTTGTACACTTGATTGCTTATAATACTGTGCAGTATGTGACCAATTATGTCATTGTAGTTTAGTCTTATTAGAAATTTGCTAtggaaaaatgtttatatattgtcAGCACAAGCAAATACTTTTGTTGCTTGAcactttaaattaatatatatatattctctctaTACTGTTTAACCTGTTTGAGTTAGAAAACAGGCTAATCAAAGTGCATTTTGATATAACCCTTTAAATTATGGGTCATCAACAGCTGTATTACACTATAAACCGAACATTAGTTGCTGTATTTACATGTTAGATTTTTATGagtaacttaaagggatagtagatttgctgttaatttacttgcACTCTGGCTTTCAAGATGAAGATCACTTATTTTTTTAGTaacattaaataagatttttgttGAAACTTTGGTGATTCTTAAAACACACGTTAATGgctaagaataaaaaataaataaacaaaataatagctGTGGGTGCCAGTACTATCCACTTACATTTTATGAGTCACTAAGTATCAGTTTCCACATAAAATATTCTTTAATGTTCAACTAAAGTAAAAGGTCACCTTTATCTTGGATGGTAATATGTAAATTAACGGCAGATTTTTAATTTTGGATGAACTCGGACTGTCCATTTGAATACTGACAATGACCCTGTAATAAACCACTATCATGTTATGCCACCCTCAGATTATGAGAAGAGACACCATAGTGCCTACTGAATTAATGATATGACCTTTAAATGATGTACTGTACAAGTAAACACACCTTCTTGAA

Function

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0035091 phosphatidylinositol binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0015459 potassium channel regulator activity molecular_function

KEGG:

id description
ko04068 FoxO signaling pathway
ko04151 PI3K-Akt signaling pathway
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-070424-62 Predicted to enable potassium channel regulator activity and protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Orthologous to several human genes including C8orf44-SGK3 (C8orf44-SGK3 readthrough).

Ensembl:

ensembl_id ENSDART00000090368

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046860 lncRNA downstream 1213 23755234 ~ 23757297 (-) True XLOC_023454
TCONS_00046859 lncRNA downstream 5935 23748335 ~ 23752575 (-) False XLOC_023454
TCONS_00046389 lncRNA downstream 115605 23599781 ~ 23642905 (-) True XLOC_023451
TCONS_00047190 lncRNA downstream 115884 23501944 ~ 23642626 (-) False XLOC_023451
TCONS_00047192 lncRNA upstream 310615 24095316 ~ 24098874 (-) False XLOC_023461
TCONS_00047193 lncRNA upstream 310615 24095316 ~ 24098879 (-) True XLOC_023461
TCONS_00046410 lncRNA upstream 326521 24111222 ~ 24114884 (-) False XLOC_023462
TCONS_00046418 lncRNA upstream 382269 24166970 ~ 24168462 (-) True XLOC_023463
TCONS_00046423 lncRNA upstream 631623 24416324 ~ 24451847 (-) False XLOC_023466
TCONS_00046395 mRNA downstream 507 23729908 ~ 23758003 (-) False XLOC_023454
TCONS_00046394 mRNA downstream 42413 23687410 ~ 23716097 (-) False XLOC_023453
TCONS_00046393 mRNA downstream 42413 23687410 ~ 23716097 (-) True XLOC_023453
TCONS_00046392 mRNA downstream 83064 23647786 ~ 23675446 (-) True XLOC_023452
TCONS_00046390 mRNA downstream 86801 23646644 ~ 23671709 (-) False XLOC_023452
TCONS_00046397 mRNA upstream 52818 23837519 ~ 23839647 (-) True XLOC_023456
TCONS_00046398 mRNA upstream 152128 23936829 ~ 23942722 (-) True XLOC_023457
TCONS_00046399 mRNA upstream 186355 23971056 ~ 23974559 (-) False XLOC_023458
TCONS_00046401 mRNA upstream 186357 23971058 ~ 23974559 (-) True XLOC_023458
TCONS_00046402 mRNA upstream 204269 23988970 ~ 23998897 (-) True XLOC_023459
TCONS_00046386 other downstream 485151 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046372 other downstream 1386410 22371986 ~ 22372100 (-) True XLOC_023446
TCONS_00046371 other downstream 1449452 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046365 other downstream 1660747 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046358 other downstream 1790394 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046400 other upstream 186355 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046409 other upstream 318020 24102721 ~ 24118395 (-) False XLOC_023462
TCONS_00046414 other upstream 351201 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other upstream 351227 24135928 ~ 24146875 (-) True XLOC_023462
TCONS_00046441 other upstream 1223616 25008317 ~ 25024023 (-) False XLOC_023476

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_05870993_05880212.mRNA True 2547 mRNA 0.43 14 CI01000018 5870313 ~ 5880705 (-)