RNA id: TCONS_00046404


Basic Information

Item Value
RNA id TCONS_00046404
length 6496
RNA type mRNA
GC content 0.40
exon number 19
gene id XLOC_023460
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 24035863 ~ 24060632 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGTTCACGCTCCCCTCATTTTCCCCTTCTCCTTTACATTTAAGACATTGTCTCTTTCCCATAGTTCTCGATGGCATTCCGACACCTCTCACAGAGAGGATATGTTAGGTGAGGCTGAACGTGTAGCAGAGTTGGTGGTCACTTTGGCCTGTATTTGGTCCTCCCCGCTACGAGTCACTCTCTATCTGGGCTTACTTTGGGCTAAACTGGGTCCTAGTGTGTTGGTGGGAGTGACATTGCTACTAGTCCTCATCCCTGTCAAGTCAGCTGTGGAGCGAAAAGCCAAACAGCTCAGGAGAACTCATCGGGTCATCAGAGAAAAGAGTGAACAGCTCATCAAGGAAATGTTGCATAAATATCAGGCGCTGAAGCTTCTTACATGGGAGTCCTGGTTTTTTCAGAGAGTTACAGAGTCAAGGACCCGGGAGCTGGAGATGCTAAGAATCCAGGGATTTCTCACTGCTTTCTCAATGCTCGACTCTATCTGTATGCCTTTTCTGGTTATTTTCTCAAGTCTCGGTGCATTCGTCCTGGTGGATGATGGGAATGTTCTGACATCATCTCAGATCTTTACATCTGTCTGTTTCTTCAGATTGCTCCGTCCACCTCTGCTGGAGTTCCTTGGACTGTTTTCTGTTCTCAAGCAGGCACAGCAGTCTTTTTGTTATCTGGAGAAAATCTTTCTCACAGAGGACCTGGGAACCTCTCAGTTTCTTACAAAAGGGGCTACAGAAGAGTCTTCTGCTGACAGCACTCAACAGCCATGTGACGAGTGTCAGGAAAAGCAGAACGATTCTGATGAGAAAAGAGATCACTATCATTTcagaaatgAGTTCAGGGAAGCCTGCTGGCTGTATTTGGGGGCTTTTGGCTGGCACTGGGTTTCAGTGTGCTCGCTGGTCTACCTGTCAGTGTGTGCTGTTAGTTTAGCACAAGATGGTGTCCTGTGCATGTGGACGGGTGAAGCCAAAGAAGTTCAAGGCCTGGATGGCTGGAAAGAGCTCAGAAACTCTCGTCTGTCTGCATATGCGCTGCTTGGACTCCTGCAAGccttcctaGTGTGCTGTGCCGCCTACTGCCTGACTTGTGGTTCTCTCAAAGCATCCCGTACCCTACACACTGAACTGCTGTCGGATGTTCTTCATCTGCCTGTGCACTCACAGAAAATGAACACCAGAAAACTGATGCAAGCGCTCACTCAGGATATGCAGGTGATTGATGAAGAGCTGCCCAAACATTTGCACAGCATCTTAAAGAGTCTTTTGGACGTTCTGAGCACCATCACTTTGATCAGCTTCATCATTCCAGTTTTCAGCCTAGCTGTGTGTCCGATGATAATCCTCCTCCTTCATATTCAGTCTCGTATCTCTTCAACCCACATGCAAATAAGAAACATGGAGGCAAACCCTGCTGTCTCGCTTACTTCACTGGCAAGAGTGACACAGTGTGCTGAAGCTTCACTTTCTGGGCCAGAACACAGGGCGGTGTGTCTGAAGCACTGCCTTCAAGCCTTCACTCAAAACCTGCTGCTCAAGTACAACACAATCAACACAGaaagTTGGGTCGTGTTGTGGTTCGATGGTGTTGCCGGGATTGTTCTCCTCCTGGTCAGTCTGATTCTCCTCCAGACTCAGCCTGAATCTGGGCTCGTGGCTCTGACTTTAATCTGTTCCTTCAATATTAAAGAAGCTCTTCACTACTGCCCTCAGGCTGCATCTGTTATCACCACTGACATGCTGAGTCTGCAAAACCTCTTTGATTCTGCCAAAGCTGAGAAGGAGGCAGAATGGACGGTCAACTACAGACCACCATACGACTGGCCTCAGCATGGAGAGGTGAAATTCAGGAACTATGAGTCTGAAGCCTCCTCTGACGGCACACCAGCTCTTAGAGGAGTTCACCTCACCATTTTAAAAGGGGAAAagATTGGTGTTGTTAGCAGGCAGAAGACAGACACTGACGTCCTGATCAACAGTCTGTTCCGGTCAGTGGAGGCCAGAAGCGGTGCTCTGCTGATTGACAACATAAACATCTCCCGCATGGGTCTTCATGACCTCCGAGGCCGCCTGCAAATCATTTCTCAGGTTCCCGTCCTGTTCTCGGGGCCCCTGAGGGCCAATCTGGACCCGTTTGCTGAACACAGTGACGCTCAGGTGTGGTTGGCATTGGAGCTCTGCCATCTGAAGGAAAGCGTTCAACAAATGCCTGCGCAGCTGCTGCACCCTGTACAGAGAACAGCCCTCGCTTTCAGcTTTGGTCAGAGGAGGCTGCTGTGTTTGGCCAGAGCTCTGCTGGCCAGGGTCAGAATCCTGCTTGTTGAAGAGCCTCTTCATCATGTGGATCCAGAAACTGAAGATTTGCTGCAACAGGTGATCCACGCGGAGTTTAAAGACTGCACAGTCCTGTTTCTCAGTCAAAACCCACTCAGTGTCCTGCACACGGACAGGGTGCTGGTTTTGGACAAGGGACAAGCTGTGAAGTTTGATGCTCCTTCCACTCTCCTCCAGCAGGGGCCGCTGTTCAGCCAATAAGATCAGACCTGCTCTTACACTACAaaagaaaCGGTCCAAAAAGAGTTATGTGAACATTTATCcatgtgtttaatgttttttaaattaaaaaaaaacatttttattaaaccacTTGTGACTAAACCTTTTTTAGTTATTCTATTTTGTGACGAGTCTGAATGGCCAAAGTACTCTTGAATCCAAAATCTTTATAGTAAAATGTTTAATCTTACTTGCAGTGTTGGGTATAATTTGTAACAAAGTTGAATTCCATATCTGCTGAGTGAAAAAGTAAAGTAAGAGATTGCTGTAaatatttaggttatttatttattaatacaatatagaaagtaacaaaacacaatgtaaaaaatcaataaagaaagtaaatattaaaagtaaTGATAAACTAATGATGTAAACAATATTAGCAACAAAGTTTGTACAATTCAGGGAGGGTAAAGAATTTCACCTAATAGTCAAACtctgtattaaataatataaaatcttTGTTCTTAGTCTGAAGAGGAGACTGTGAGAGAAAGCTTACTGGTTGTTAAATTAGAAAATTTGTAACTTGcagattaaaatgatttaaataattttataaaggccatgtttgaaacaaatgtaaaaacataataaatgttaagaATTTCAGATATTGagattttacaatttaaaaaaagcaataaagtaATAGCAGAGACCTACACTCTTAAAGTAAATTACCCAACTCTGCTTACTAGTAACTTTTGGAATAGTTACTAGTATCCATTGAACAAATACTAGAATCTAATTAAATTGTGTGAGTGTCCAATGAAAAGATTCTTGTATTTAAAACAGTACCAGTATCTATATATGTACAAAATTTAGTGCTagcaaaatgcaaataaatactaCTGCATATAATGGATTGCATTGTAAATCGACTCGCCATAATACATTTATTTCCTATTTTtacttttaacaaaaaataagttcACTGAGTATTTCATGTCATTAAATCGCATTAAACCTCTTGCATGCTTTATGTACACTAGTGCAGTTCGCTAAATGACCACCGGTGTCACTAATAACACGATCGTTTCTGAATTCTGCATTAAACGCCATTTATACGTTGCTCTTATTAGTAAACAATTTCTCCATCATGAGCTCGACCAGTATTGCATATTTCATCCTCTTAAATCCAGAGTTGTTTCTTTTAATCACTTTCTCTTCatgataaaagcagtttttggtTTTCAGAAGTTTACAACAAACCCAGTCAGTTATTGCCTCAGCAAACACTGGAGCAACTGCACACTTGTGAAAAGCTTCTTGCGAAACACAAACCTTTCTCTGGACTTATAAATAAAGGCATTCAGCAGCTCCACCATACACCTCCACTGGTCTTGATAAAGCAGATATCAGCAGTGATACAATATGAGGCTGGCAGTGGTGCTTTTGTGTCTGGCGTGGATGTCCTCGTGTGAAAGCAAGACACTGGGACGCTGTGATGTTTACAAGATCTTCAAGAATGAAGGGCTTGATGGATTTGAGGGATTCTCCATTGGCAACTGTGAGGTTTATTTTTATTCTCATTACAAATATGCAGGATTTAGCCATTTTGTTTCTGTATTAGCTAATGATAAATATGTTGTTTCTGATATGAATTTGAACAGATGTGTGCACTGCCTACTGGGAAAGCAGGTTTAAGACCCACCGAGTGCGTTCAGCTGATACGGGGAAGGACTACGGGATCTTCCAGATTAACAGCTTCAAGTGGTGTGATGACGGGACCCCTGGTGGGAAGAATTTGTGCAAAGTGGCCTGTTCAGGTATGGTATTCTTGTAAATAGTTTATGTCAGAGGTGCCCaaatttggtcctggagggccgctgtcctgcatagttgcaacttgcttcaacacacctctctggaagtttctagtatacctagaaagagcttgattagctggttcaggtgtgttcaattGGGGTTAtaactaaaatatgtaggacaccggccctccagaaccgagttttaaatgttaaatttggcATGAAAACTTTAGATATTGGTAGCAAATTTCAGAAAACGGTCATAAATATGTTCACCAGCATGGACCACACCACACTTTaagctagactttattgtagggatgaaAGGGATGAAGTGGCATGAAGGGGAAGGGaagtaagaggataaacagtgaacaggtTGATTGGGTGTCCTAcgatgatgcccagagactcagagtgggggtaGTGTCTCTGTAATGTTTTGATATAAGAGAGGGTTATAGGATTCTTAATGGGAAGCAAGGAAATAAAGGGAGGGAAGGTGGGTTTGAGAGAATGAGAAGTACAGTGCTAGagggctggtctgccttaaataagttttagaGAGTACGTGATTGGTTAAGGAGGCAAAGTGAGACATGGGCCTGCTGCCAATTCTTTGTTAATAATTTAACTTCATTAAGGTAGCATGTTGAATTGAACTTCaaatataaaagaagaaaaacttGAATAGTATTTTCCAAAATTTCTTGTAAACTTCTCAAATAATTACaaagaaacagaaacaaaaacctttgaataaaatactgaaaatatgttTTCAAAACCATAGTTGAGACAAAACGCATAAAAAGACTGATTCAAAAGTTTATCTAAAAACAGAGTGTCCGTGGGGTTTTAAGAAGAtataaaagttgataaatcaatgaagaaaattttatttatttattttctatgtatatatatatatatataaatttttttttttcacttttatgtGAGATAGAACAGTGgagatttcagacaggaaagtattgagAAAAAAGAGAGGGGAAGGGCTGGCAAAGGGCCTCAAGCTgagaatcaaactcaggtcactgcaaagcaccatggtgctatatgtcggcaCACTTAACCACTTGACTATTGGCGCCAACAATGTAAAGATATTTAAGggccttaaaaggtattaaaaagtcttaaatgctgttTTGGTATTACATTTGATATAATCTTTGATTATGCGAAGTGTGGTTGTAtcctaaagtttgcctgaattaaatctgtgaatatcaggatgctgtgtagtttatgaaatcaataaaaacctgctagatttgacatcatgctgctttgtttactgcagtgaCCAAGGCAACACCTTTATTTCTGCAATTCTTtaggcgccaacctgctgaattataGCTAGATTTAATTGGTTTTCATTCAGTatctaaaaaatgttttagttttggattagtttcttactttaatatttagtaaatatactgtaagttaaaatcttgccagtgtttccggttgaaacctaaagtggttataagtttgaaaatgtatggaaagagccttgaaggtcttaaaaggtactgaatttcactctctgattcctgtatatactctgaaAAAATATTAAGCATAATTGTAtcagacaaaacataaaatagttccgtttcctcgtgagatcagactgAATATAGAGAAAAAGAAGAATTGCAAAGAGTAAAGGTAGAATTGTGAGAGCAAGTCCCCACCCcagtttattattacttttattattaatttaatatacttTGTGTCTTAACATGCAACAAAATCTGTCAGTCAAAATGCTATTCATTAAACCTAATACAAGAAATAAGCTAGTATATCAAGAGATAATAAATATCATTGAATAAATGTCCTCTACATGAACAAAAATTTTGTTTCTATATAAGTCAACGGTAGTTATTTGAACATGCTACTTATTTTGAGGTGCATTTGAGGTGAATTGTGAGTTGAAAATTATAatgtattgtttgtgttgtgttatgcTGACTTTTTGACCCATTATTGATTGTAAAACTTTCCTATAATACTTCTAACACTAAAAATCTATCCCATCTGCTAGACTTGCTTAACGATGACCTGAAAGCTTCAGTTGAGTGTGCAAAGCTGATTGTGAAAATGGACGGGCTGAAATCATG

Function

GO:

id name namespace
GO:0003796 lysozyme activity molecular_function

KEGG:

id description
ko04970 Salivary secretion
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-050517-26 Predicted to enable ATPase-coupled transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human ABCC13 (ATP binding cassette subfamily C member 13 (pseudogene)).

Ensembl:

ensembl_id ENSDART00000090514

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046860 lncRNA downstream 278898 23755234 ~ 23757297 (-) True XLOC_023454
TCONS_00046859 lncRNA downstream 283620 23748335 ~ 23752575 (-) False XLOC_023454
TCONS_00046389 lncRNA downstream 393290 23599781 ~ 23642905 (-) True XLOC_023451
TCONS_00046387 lncRNA downstream 403143 23589745 ~ 23633052 (-) False XLOC_023451
TCONS_00047192 lncRNA upstream 34684 24095316 ~ 24098874 (-) False XLOC_023461
TCONS_00047193 lncRNA upstream 34684 24095316 ~ 24098879 (-) True XLOC_023461
TCONS_00046410 lncRNA upstream 50590 24111222 ~ 24114884 (-) False XLOC_023462
TCONS_00046418 lncRNA upstream 106338 24166970 ~ 24168462 (-) True XLOC_023463
TCONS_00046423 lncRNA upstream 355692 24416324 ~ 24451847 (-) False XLOC_023466
TCONS_00046402 mRNA downstream 37298 23988970 ~ 23998897 (-) True XLOC_023459
TCONS_00046399 mRNA downstream 61636 23971056 ~ 23974559 (-) False XLOC_023458
TCONS_00046401 mRNA downstream 61636 23971058 ~ 23974559 (-) True XLOC_023458
TCONS_00046398 mRNA downstream 93473 23936829 ~ 23942722 (-) True XLOC_023457
TCONS_00046397 mRNA downstream 196548 23837519 ~ 23839647 (-) True XLOC_023456
TCONS_00046406 mRNA upstream 41179 24101811 ~ 24111674 (-) False XLOC_023462
TCONS_00046407 mRNA upstream 41179 24101811 ~ 24118451 (-) False XLOC_023462
TCONS_00046408 mRNA upstream 41182 24101814 ~ 24114217 (-) False XLOC_023462
TCONS_00046411 mRNA upstream 57561 24118193 ~ 24162930 (-) False XLOC_023462
TCONS_00046412 mRNA upstream 60140 24120772 ~ 24146875 (-) False XLOC_023462
TCONS_00046400 other downstream 58910 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046386 other downstream 762836 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046372 other downstream 1664095 22371986 ~ 22372100 (-) True XLOC_023446
TCONS_00046371 other downstream 1727137 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046365 other downstream 1938432 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046409 other upstream 42089 24102721 ~ 24118395 (-) False XLOC_023462
TCONS_00046414 other upstream 75270 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other upstream 75296 24135928 ~ 24146875 (-) True XLOC_023462
TCONS_00046441 other upstream 947685 25008317 ~ 25024023 (-) False XLOC_023476
TCONS_00046479 other upstream 2298607 26359239 ~ 26362471 (-) False XLOC_023496

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_06027217_06038423.mRNA True 3193 mRNA 0.48 22 CI01000018 6026991 ~ 6038423 (-)