RNA id: TCONS_00004461



Basic Information


Item Value
RNA id TCONS_00004461
length 2071
RNA type mRNA
GC content 0.51
exon number 16
gene id XLOC_002350
representative True

Chromosome Information


Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 39212601 ~ 39234155 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


TTTAAACGCAGAGAGggttgtgtgtgaaagtgtggaAGGGCTGGAGTGAGTGAACCGCCGATGAATAAGACTGGTGTCAAGAGTTAGTCCTGCCTCCCGTGTGTAAAGATGACCAAGCTGGGCTTCCTGCGTCTGTCCTATGAGAAACAGGACACCCTGCTGAAGCTGCTCATCCTGTCTATGGCAGCCGTCCTGTCCTTCTCCACCAGACTGTTTTCTGTGCTTCGGTTCGAGAGCGTCATCCACGAGTTTGATCCgTATTTCAATTACCGGACCACTCGCTTCCTGGCAGAAGAGGGATTTTACAAATTCCATAACTGGTTCGATGATCGGGCTTGGTATCCACTTGGGAGGATTATTGGAGGCACCATCTATCCTGggTTGATGATCACATCAGCAGCTCTATATCACGTGCTGCACTTCTTCCACATCACCATTGACATCCGTAATGTCTGTGTGTTCCTCGCTCCTCTCTTCTCCTCCTTCACCGCTATCGTCACTTACCACTTCACCAAAGAGCTGAAGGATGCAGGCGCTGGGCTTCTGGCTGCCGCTATGATCGCAGTCGTGCCTGGATACATCTCCCGTTCTGTGGCAGGCTCTTATGATAATGAAGGAATTGCCATTTTCTGCATGCTGTTGACGTACTACATGTGGATCAAGGCAGTGAAGTCGGGCTCCATTTATTGGTCATCCATGTGTGCATTGGCATATTTTTACATGGTGTCCTCCTGGGGTGGTTACGTGTTTCTGATTAACCTCATTCCTCTGCACGTGCTGGTGTTGATGCTCACCGGCCGGTTCTCTCATCGCATCTATGTGGCCTACTGCACAGTCTACTGCCTGGGCACCATCCTCTCCATGCAGATCTCTTTTGTTGGATTCCAGCCCGTCCAGTCCTCTGAACACATGGCTGCTTTTGGAGTGTTTGGTCTGTGCCAGATTCACGCTTTTGTCGATTACCTGCGGAGCAAACTGAACGCGCAGCAGTTTGAGGTGTTGTTCAGGAGTGTCATTTCACTGGTCGGGATCATCCTGCTGTCTGTGGGCGGGTTGCTCATGCTGACAGGAAAAATCTCACCTTGGACTGGCCGTTTCTACTCTCTGCTGGATCCATCGTACGCCAAAAACAACATTCCCATCATCGCCTCTGTGTCTGAGCATCAGCCCACCACATGGTCCTCCTACTACTTTGACCTCCAGCTTCTGGTCTTCATGTTTCCAGTTGGCCTTTACTACTGCTTCAACAACCTCTCTGATGCCACGATTTTCATCATCATGTATGGCGTCACCAGCATGTACTTCTCAGCTGTGATGGTGCGTCTCATGTTGGTCCTCGCTCCAGTAATGTGCATCCTGTCTGGCATTGGAGTCTCTCAGGTCCTCACCACCTTCATGAAGAACCTGGATGTCAGTCGACCTGACAAGAAAACCAAGAAGCAGCAGGACTCCACCTACCCAATCAAGAACGAAGTGGCAAGTGGGATGATTCTAGTGATGGCGTTCTTCCTCATCACATACACTTTCCACTCCACCTGGGTGACCAGCGAGGCGTATTCGTCCCCCTCCATCGTGCTTTCTGCTCGCGGTGGCGACGGCAGCCGCATCATCTTTGATGACTTCAGAGAGGCTTATTACTGGCTCAGACACAACACACCAGAGGATGCTAAAGTGATGTCGTGGTGGGATTATGGGTATCAGATAACAGCGATGGCCAATCGAACGATTCTGGTTGACAATAACACTTGGAATAACACTCACATCTCCAGAGTGGGTCAGgCAATGGCCTCCACAGAGGAGAAAGCCTATGAGATTATGCGAGAGCTGGATGTGAGCTACGTCCTGGTGATCTTTGGCGGATTGACCGGATATTCATCTGATGATATTAATAAGTTCCTGTGGATGGTGCGTATCGGTGGCAGCACAGACACAGGGAGGCACATAAAGGAGCACGATTATTACACGCCCACTGGAGAGTTTCGTGTGGACCGCGAGGGCTCTCCTGTCCTGCTCAACTGCCTCATGTACAAGATGTGCTACTATCGCTTCGGCCAGGTCTACACCGAAGCCA

Function


GO:

id name namespace
GO:0043687 post-translational protein modification biological_process
GO:0006486 protein glycosylation biological_process
GO:0018279 protein N-linked glycosylation via asparagine biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004576 oligosaccharyl transferase activity molecular_function
GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-021015-3 Predicted to enable dolichyl-diphosphooligosaccharide-protein glycotransferase activity. Predicted to be involved in post-translational protein modification and protein N-linked glycosylation via asparagine. Predicted to act upstream of or within protein glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in axial mesoderm; hatching gland; musculature system; notochord; and otic placode. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Iw. Orthologous to human STT3A (STT3 oligosaccharyltransferase complex catalytic subunit A).

Ensembl:

ensembl_id ENSDART00000159501

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00004454 lncRNA upstream 125045 39084012 ~ 39087853 (+) True XLOC_002346
TCONS_00004449 lncRNA upstream 452454 38749266 ~ 38760444 (+) False XLOC_002344
TCONS_00005933 lncRNA upstream 453689 38749366 ~ 38759209 (+) True XLOC_002344
TCONS_00005729 lncRNA upstream 461386 38749352 ~ 38751512 (+) False XLOC_002344
TCONS_00005932 lncRNA upstream 779689 38432338 ~ 38433209 (+) True XLOC_002332
TCONS_00004466 lncRNA downstream 52593 39283996 ~ 39285617 (+) True XLOC_002352
TCONS_00005730 lncRNA downstream 97899 39329302 ~ 39393816 (+) True XLOC_002354
TCONS_00005731 lncRNA downstream 549158 39780561 ~ 39780849 (+) True XLOC_002357
TCONS_00005934 lncRNA downstream 677735 39909138 ~ 39917508 (+) True XLOC_002359
TCONS_00005935 lncRNA downstream 890971 40122374 ~ 40198832 (+) False XLOC_002361
TCONS_00004459 mRNA upstream 4998 39200213 ~ 39207900 (+) True XLOC_002349
TCONS_00004458 mRNA upstream 5410 39199547 ~ 39207488 (+) False XLOC_002349
TCONS_00004457 mRNA upstream 33561 39164638 ~ 39179337 (+) True XLOC_002348
TCONS_00004455 mRNA upstream 89685 39091353 ~ 39123213 (+) False XLOC_002347
TCONS_00004462 mRNA downstream 17508 39248911 ~ 39273031 (+) False XLOC_002351
TCONS_00004463 mRNA downstream 17632 39249035 ~ 39267438 (+) False XLOC_002351
TCONS_00004464 mRNA downstream 32424 39263827 ~ 39267444 (+) True XLOC_002351
TCONS_00004465 mRNA downstream 52582 39283985 ~ 39294725 (+) False XLOC_002352
TCONS_00004467 mRNA downstream 73019 39304422 ~ 39307819 (+) True XLOC_002353
TCONS_00004447 other upstream 529118 38683666 ~ 38683780 (+) True XLOC_002342
TCONS_00004441 other upstream 664693 38548089 ~ 38548205 (+) True XLOC_002336
TCONS_00004438 other upstream 724069 38488708 ~ 38488829 (+) True XLOC_002333
TCONS_00004421 other upstream 2065114 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004415 other upstream 2252208 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004472 other downstream 460974 39692377 ~ 39699487 (+) True XLOC_002355
TCONS_00004473 other downstream 529351 39760754 ~ 39760879 (+) True XLOC_002356
TCONS_00004486 other downstream 1319327 40550730 ~ 40550954 (+) True XLOC_002366
TCONS_00004487 other downstream 1323514 40554917 ~ 40555131 (+) True XLOC_002367
TCONS_00004493 other downstream 1368532 40599935 ~ 40600502 (+) True XLOC_002373

Expression Profile


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