RNA id: TCONS_00046418


Basic Information

Item Value
RNA id TCONS_00046418
length 699
lncRNA type retained_intron
GC content 0.35
exon number 4
gene id XLOC_023463
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 24164227 ~ 24168533 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTTCTCGCAAGCGGCGCTGATCTGCTCACCAACAGCACGTTTGAGAAGTAAAATCTTTGACATATGGTTATAACTCCCTGACGTTTCTGATCTTTACACGACAGCCGTCGACGTGCTTAAACAAATATGCCGAAAAACAAAGGAAAAGGAGGAAAAAATAGGCGACGTGGTAAGAACGAGAATGAATCTGAGAAGAGAGAGCTGGTGTTCAAAGAGGATGGACAAGaaTATGCTCAGGTCATCAAGATGTTGGGAAATGGGAGACTGGAGGCCATGTGTTTCGATGGAGTCAAGCGGCTTTGTCACATCCGAGGAAAGCTCCGgaaaaagGTGTGGATCAACACGTCAGACATTATACTCATTGGATTAAGGGACTACcaggtttgttttatttaattaaatgtatagctagaagtaataaaatataactcATATTTAATTGGTTAAAGGATAACTagatttttaaagcatattttatgatttagtataattatgttaatattgtaaaatactgACATTCCTTGATTGCTTTGtccaatataatataaaagatacagttaatggaaaatttaattaaatgcaatcaaatattgtaatgtaaaggactataaatataaaatattattgtacaaTGATAACCACGCTATTTTcgtttgattgtttaatttctctATTTGAACCCTGTCACACtccccag

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:1903798 regulation of production of miRNAs involved in gene silencing by miRNA biological_process
GO:0046984 regulation of hemoglobin biosynthetic process biological_process
GO:0043249 erythrocyte maturation biological_process
GO:0005515 protein binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1319 Predicted to enable translation initiation factor activity. Acts upstream of or within erythrocyte maturation; regulation of hemoglobin biosynthetic process; and regulation of production of miRNAs involved in gene silencing by miRNA. Predicted to be active in cytoplasm. Orthologous to human EIF1AX (eukaryotic translation initiation factor 1A X-linked).

Ensembl:

ensembl_id ENSDART00000134631

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046410 lncRNA downstream 52086 24111222 ~ 24114884 (-) False XLOC_023462
TCONS_00047193 lncRNA downstream 68091 24095316 ~ 24098879 (-) True XLOC_023461
TCONS_00047192 lncRNA downstream 68096 24095316 ~ 24098874 (-) False XLOC_023461
TCONS_00046860 lncRNA downstream 409673 23755234 ~ 23757297 (-) True XLOC_023454
TCONS_00046859 lncRNA downstream 414395 23748335 ~ 23752575 (-) False XLOC_023454
TCONS_00046423 lncRNA upstream 247862 24416324 ~ 24451847 (-) False XLOC_023466
TCONS_00047194 lncRNA upstream 247862 24416324 ~ 24456346 (-) False XLOC_023466
TCONS_00046424 lncRNA upstream 247862 24416324 ~ 24503022 (-) False XLOC_023466
TCONS_00046861 lncRNA upstream 250833 24419295 ~ 24451803 (-) False XLOC_023466
TCONS_00047195 lncRNA upstream 263310 24431772 ~ 24451803 (-) False XLOC_023466
TCONS_00046413 mRNA downstream 3769 24120772 ~ 24163201 (-) False XLOC_023462
TCONS_00046411 mRNA downstream 4040 24118193 ~ 24162930 (-) False XLOC_023462
TCONS_00046412 mRNA downstream 20095 24120772 ~ 24146875 (-) False XLOC_023462
TCONS_00046407 mRNA downstream 48519 24101811 ~ 24118451 (-) False XLOC_023462
TCONS_00046408 mRNA downstream 52753 24101814 ~ 24114217 (-) False XLOC_023462
TCONS_00046419 mRNA upstream 15290 24183752 ~ 24271629 (-) True XLOC_023464
TCONS_00046420 mRNA upstream 104909 24273371 ~ 24282427 (-) False XLOC_023465
TCONS_00046421 mRNA upstream 104987 24273449 ~ 24281806 (-) False XLOC_023465
TCONS_00046422 mRNA upstream 108104 24276566 ~ 24281792 (-) True XLOC_023465
TCONS_00046425 mRNA upstream 533318 24701780 ~ 24724233 (-) False XLOC_023469
TCONS_00046414 other downstream 3860 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other downstream 20095 24135928 ~ 24146875 (-) True XLOC_023462
TCONS_00046409 other downstream 48575 24102721 ~ 24118395 (-) False XLOC_023462
TCONS_00046400 other downstream 189685 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046386 other downstream 893611 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046441 other upstream 839855 25008317 ~ 25024023 (-) False XLOC_023476
TCONS_00046479 other upstream 2190777 26359239 ~ 26362471 (-) False XLOC_023496
TCONS_00046480 other upstream 2193284 26361746 ~ 26368871 (-) True XLOC_023496
TCONS_00046487 other upstream 2306720 26475182 ~ 26479841 (-) False XLOC_023500
TCONS_00046496 other upstream 2340426 26508888 ~ 26534654 (-) False XLOC_023502

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_06086167_06089014.mRNA True 452 mRNA 0.40 6 CI01000018 6086072 ~ 6089014 (-)