RNA id: TCONS_00004463


Basic Information

Item Value
RNA id TCONS_00004463
length 2490
RNA type mRNA
GC content 0.46
exon number 11
gene id XLOC_002351
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 39248911 ~ 39273031 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGAGCGTTTTATGACTGAATGACTGTCTGCTGACAATAACAATGTGGCGCAGGTTATTCGCCACTGTCCCTGCTTTTCGAGCCCAGAAAGCACCCTGCAGGagttttaaaagcagcaggaGATCTGACAAGGACGTTTTTGAAGaagtggAGGATCAGTTCCGGGCGTTTCGGAAAAAAGCTGTGAAAGCGATGCCCGGCAGTGACTGGAGCCCATTTGAGCTGACGCCCGGCCTGCCTCCTGAGAGGGCCGATGTGGTGATTATAGGAGGCGGCGTAGTGGGATGGTCCATCGCATACTGGATAAAGAGGAAAGAGAGAACGAGGGGCGCTCTGAGAGTGGTGGTGGTGGAGAAAGACCCTACTtatTCTCAGGCTTCAACTGTGCTGTCATGTGGTGGAATCCGACAGCAGTTTTCCCTGAAAGAAAATATCCTGCTTTCACTGGAATCTGCTGATTTCTTGAGGAACATTAATAAGCATCTGTGGGTGACGAATGAAGACCCCGTCGATCTGCAGTTTAATCATTCGGGATATCTCTTCCTCGCCAGTGAAAAATCCGCTCATGTTATGGAGGAAAACTACAGCACACAGAGATATGCTGGTGCGAAGGTGGTCCTCCTGTCACCTTCTCAGCTGAAGGAGCGATTCCCCTGGATGAACACAGAGGGCGTCGCTCTGGCTTCTCTTGGACTGGAGAACGAGGGCTGGTTTGACCCCTGGTCTCTGCTGAACGCTTTCAGACGCAAGGCCTTGTCTATGGGAGTCTATCAGTGCTTCGGAGAAGTCACAGgTTTCAGATACAGCACACAGATCGCAGAAGTTGCAGAGGGAGACTTTGTTGATTTCAGAAGGATAAAATGTGTCAATGTGCGGATGCCCAACAGTCTGGAGTATCAGCCAGTCGAATGCCCGGTTGTGGTAAACGCAGCGGGTGCAAACTCGGGGAAGATCGCTGCCATGCTGGGCATCGGATTAGGCCCGGAGGAATCCGTATCTGGAATTCCATTTCCTGTGGAACCCAGGAAGAGGTTTGCTTATGTGGTTCATTGCCCTGATGGACCGGGTTTGGACACTCCGTTTCTGATCGATTATTCAGGGGTTTACCTGAGGCGAGAGGGACTGGGAGGAAATTACATCGCAGGAATGTCACCAGAGGAGACAGAAGAACCGGATATCAGTAACCTGGATGTGGACCATGAGTTTTTTCAAGAGAAGGTCTGGCATCATCTGGCTCACCGAATTCCTGCTTTTGAGAAGCTGAAGGTTTCAAGCGCGTGGGCTGGATTTTACGACTACAACACCTTTGATCAGAATGGTATTTTAGGACTGCACCCTCTAGTGGCCAACATGTACTTCGCCACAGGCTTCAGCGGTCACGGTTTACAGCAGTCTCCTGCGGTGGGACGTGCCATCGCTGAGCTCATTCTGGACAGAGGATATAAAACCATCGACCTCAGTGCTTTTGGCATCAAACGGATCATCAAGAAGAAGCCCATACTGGAGAGAAACATTGTGTGAGGAAGACGGTATGTGCAGGGAAACTCGCTGGAGAAACTGAAGCGATGTTTCAGATGGTGATTCAGTTAAGTAATGAAACAGAAACTTAGATTATTGGGagattaaagggttagttcactcaaaaatgaaggTTCTGTTAACAATTACAACTTgtatagcatatgttttacacagcggatgcttttccggctgcaacctagtactgggaaacaaccatacacactcatacacaacagtcaatttagtttattcaattcacctatagagcatgtctttggactgtggaggaaaccagagcacctggaggaaacccacgccaactcggggagaacatgcaaactccacacagaaacgccaactgacccagtcggggagtcgaaccagcgacctttttgctgtgaggtgatagtgctaaccactgagccaccatactttactatagtatggtttaaaaacactatagtattttttaatgtgagTTTTCTGAACGTctgaccattgctgtctattgaggatgagagagctctctgatttcatctaaaatatcttcatttgtcttctgaagatgaatgaCGGGAAATTGAAAAGGCATGAGGGGTAGTAACTGACAGAATtgagatttttgggtgaactaaccctttaaagagGAAAGTGATAAATGCTGCTGGAGTTTCAACCAAATTCACCGTGCAAAAAAATCATTGCAATACCAACAAGAGATCAGGAGATTCAGTTGCGTCTTTGAATTTGCATATATTTGAATATGCATACGACAGATTCATCTTTTAGACTGTTTTTAGGTTGCCATATTCATAAAGTTTCAGAAATGAACACCAAAAACAATCGTAAACTTTAAAAGTTTGTCTTCAAATTTAAATCAGACCTGATGGACTgaattttataaatgtgtacatgtTATTGTTTGTTAATATGGATGTGAAAACGCATAAATATTGTGGAAGAGCACC

Function

GO:

id name namespace
GO:0032981 mitochondrial respiratory chain complex I assembly biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-080204-64 Predicted to enable oxidoreductase activity. Predicted to be involved in mitochondrial respiratory chain complex I assembly. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 19. Orthologous to human FOXRED1 (FAD dependent oxidoreductase domain containing 1).

Ensembl:

ensembl_id ENSDART00000167974

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004454 lncRNA upstream 161182 39084012 ~ 39087853 (+) True XLOC_002346
TCONS_00004449 lncRNA upstream 488591 38749266 ~ 38760444 (+) False XLOC_002344
TCONS_00005933 lncRNA upstream 489826 38749366 ~ 38759209 (+) True XLOC_002344
TCONS_00005729 lncRNA upstream 497523 38749352 ~ 38751512 (+) False XLOC_002344
TCONS_00005932 lncRNA upstream 815826 38432338 ~ 38433209 (+) True XLOC_002332
TCONS_00004466 lncRNA downstream 16558 39283996 ~ 39285617 (+) True XLOC_002352
TCONS_00005730 lncRNA downstream 61864 39329302 ~ 39393816 (+) True XLOC_002354
TCONS_00005731 lncRNA downstream 513123 39780561 ~ 39780849 (+) True XLOC_002357
TCONS_00005934 lncRNA downstream 641700 39909138 ~ 39917508 (+) True XLOC_002359
TCONS_00005935 lncRNA downstream 854936 40122374 ~ 40198832 (+) False XLOC_002361
TCONS_00004460 mRNA upstream 14880 39212601 ~ 39234155 (+) False XLOC_002350
TCONS_00004461 mRNA upstream 17632 39212898 ~ 39231403 (+) True XLOC_002350
TCONS_00004459 mRNA upstream 41135 39200213 ~ 39207900 (+) True XLOC_002349
TCONS_00004458 mRNA upstream 41547 39199547 ~ 39207488 (+) False XLOC_002349
TCONS_00004457 mRNA upstream 69698 39164638 ~ 39179337 (+) True XLOC_002348
TCONS_00004465 mRNA downstream 16547 39283985 ~ 39294725 (+) False XLOC_002352
TCONS_00004467 mRNA downstream 36984 39304422 ~ 39307819 (+) True XLOC_002353
TCONS_00004469 mRNA downstream 208994 39476432 ~ 39841419 (+) False XLOC_002355
TCONS_00004468 mRNA downstream 208994 39476432 ~ 39841419 (+) False XLOC_002355
TCONS_00004470 mRNA downstream 209162 39476600 ~ 39825708 (+) False XLOC_002355
TCONS_00004447 other upstream 565255 38683666 ~ 38683780 (+) True XLOC_002342
TCONS_00004441 other upstream 700830 38548089 ~ 38548205 (+) True XLOC_002336
TCONS_00004438 other upstream 760206 38488708 ~ 38488829 (+) True XLOC_002333
TCONS_00004421 other upstream 2101251 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004415 other upstream 2288345 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004472 other downstream 424939 39692377 ~ 39699487 (+) True XLOC_002355
TCONS_00004473 other downstream 493316 39760754 ~ 39760879 (+) True XLOC_002356
TCONS_00004486 other downstream 1283292 40550730 ~ 40550954 (+) True XLOC_002366
TCONS_00004487 other downstream 1287479 40554917 ~ 40555131 (+) True XLOC_002367
TCONS_00004493 other downstream 1332497 40599935 ~ 40600502 (+) True XLOC_002373

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000197_00306872_00310199.mRNA True 1295 mRNA 0.48 9 CI01000197 306872 ~ 310339 (+)
bowfin (Amia calva) AMCG00004478 True 1014 mRNA 0.58 8 CM030121.1 50722025 ~ 50732800 (+)