RNA id: TCONS_00004466


Basic Information

Item Value
RNA id TCONS_00004466
length 636
lncRNA type retained_intron
GC content 0.38
exon number 2
gene id XLOC_002352
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 39283985 ~ 39294725 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCGCGGTGAATCATGGCGGAAAGCGAGAACGGGAAAGACGGCAAAAGCGCTGCAAAAAGACCGAAAATAGATGCGGAAAACGAGAAAAGAAATGCTGATGAACAGTCCACCGATAACCCAGTGGTAGACTTCCAGCTCACCCGCATTCTACGCGATAATCCACGAGAAAAGAGCATCTTCATTcacggaaagGTGAAGGATCAGGATGCTGTTGTGATCCTGGAGAAATCTCCGTTCAGACAGGACTCGCTGCCTGAGTTACTAAAGACTAGTCAACTCAAGCTGGAGATGCAGAATGACGTGTATAGCACATACCAGCTGCACGCACCGCCACAACTCAATGGTAGATCACAATATGTTGTTGAAATGTGATTTATTCCTCAGATTCAAAGCTGCATTTTCACCATCATTACTGCAGGCTTTAATGCCAAATGATACTTaaaaaaatcattgtaatatacatatttactgttcaagaaacattattattatcattattaaggtttTTATTGTATTGAAATATTTGCTCTTAAATAATATTCTTctgtgacattattattattatttttttttttaatgtcccaTGGTGATCACAAATTTCGAtatcttattaaaaatataatctttctGACCCC

Function

GO:

id name namespace
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA biological_process
GO:0006397 mRNA processing biological_process
GO:0000932 P-body cellular_component
GO:0005634 nucleus cellular_component
GO:0050072 m7G(5')pppN diphosphatase activity molecular_function
GO:0000340 RNA 7-methylguanosine cap binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
ko03018 RNA degradation
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-040311-1 Predicted to enable RNA 7-methylguanosine cap binding activity and m7G(5')pppN diphosphatase activity. Predicted to be involved in deadenylation-dependent decapping of nuclear-transcribed mRNA. Predicted to act upstream of or within mRNA processing. Predicted to be located in cytoplasm. Predicted to be active in P-body and nucleus. Orthologous to human DCPS (decapping enzyme, scavenger).

Ensembl:

ensembl_id ENSDART00000140681

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004454 lncRNA upstream 196143 39084012 ~ 39087853 (+) True XLOC_002346
TCONS_00004449 lncRNA upstream 523552 38749266 ~ 38760444 (+) False XLOC_002344
TCONS_00005933 lncRNA upstream 524787 38749366 ~ 38759209 (+) True XLOC_002344
TCONS_00005729 lncRNA upstream 532484 38749352 ~ 38751512 (+) False XLOC_002344
TCONS_00005932 lncRNA upstream 850787 38432338 ~ 38433209 (+) True XLOC_002332
TCONS_00005730 lncRNA downstream 43685 39329302 ~ 39393816 (+) True XLOC_002354
TCONS_00005731 lncRNA downstream 494944 39780561 ~ 39780849 (+) True XLOC_002357
TCONS_00005934 lncRNA downstream 623521 39909138 ~ 39917508 (+) True XLOC_002359
TCONS_00005935 lncRNA downstream 836757 40122374 ~ 40198832 (+) False XLOC_002361
TCONS_00005936 lncRNA downstream 836982 40122599 ~ 40134405 (+) False XLOC_002361
TCONS_00004462 mRNA upstream 10965 39248911 ~ 39273031 (+) False XLOC_002351
TCONS_00004464 mRNA upstream 16552 39263827 ~ 39267444 (+) True XLOC_002351
TCONS_00004463 mRNA upstream 16558 39249035 ~ 39267438 (+) False XLOC_002351
TCONS_00004460 mRNA upstream 49841 39212601 ~ 39234155 (+) False XLOC_002350
TCONS_00004461 mRNA upstream 52593 39212898 ~ 39231403 (+) True XLOC_002350
TCONS_00004467 mRNA downstream 18805 39304422 ~ 39307819 (+) True XLOC_002353
TCONS_00004469 mRNA downstream 190815 39476432 ~ 39841419 (+) False XLOC_002355
TCONS_00004468 mRNA downstream 190815 39476432 ~ 39841419 (+) False XLOC_002355
TCONS_00004470 mRNA downstream 190983 39476600 ~ 39825708 (+) False XLOC_002355
TCONS_00004471 mRNA downstream 406624 39692241 ~ 39841419 (+) False XLOC_002355
TCONS_00004447 other upstream 600216 38683666 ~ 38683780 (+) True XLOC_002342
TCONS_00004441 other upstream 735791 38548089 ~ 38548205 (+) True XLOC_002336
TCONS_00004438 other upstream 795167 38488708 ~ 38488829 (+) True XLOC_002333
TCONS_00004421 other upstream 2136212 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004415 other upstream 2323306 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004472 other downstream 406760 39692377 ~ 39699487 (+) True XLOC_002355
TCONS_00004473 other downstream 475137 39760754 ~ 39760879 (+) True XLOC_002356
TCONS_00004486 other downstream 1265113 40550730 ~ 40550954 (+) True XLOC_002366
TCONS_00004487 other downstream 1269300 40554917 ~ 40555131 (+) True XLOC_002367
TCONS_00004493 other downstream 1314318 40599935 ~ 40600502 (+) True XLOC_002373

Expression Profile

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