RNA id: TCONS_00005730


Basic Information

Item Value
RNA id TCONS_00005730
length 275
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id XLOC_002354
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 39329302 ~ 39393816 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTGCTCATGAATTGGAGTGGTCTGAGGTGACACCCTTGTTTAATTATTCATAGGTCCACTGAGCAAGAAGACAGAGAGAAAGTCTTAAGGTCTGTCCAGGGATCAGATGTCAGGCTTATGACGCTTATCATCTCAAAAAGAGTGTCATCTTTGACGCAGATCTTGACCTTTCCAAAATGGCGGACGTGTGGGACTGCCAATCTGGAGCCAGGTATGTTTTCAGTGCATTGTTTCCATTATTAAATAAGCAAAACGGTTTGTCAGTATTGGTTTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004466 lncRNA upstream 43685 39283996 ~ 39285617 (+) True XLOC_002352
TCONS_00004454 lncRNA upstream 241449 39084012 ~ 39087853 (+) True XLOC_002346
TCONS_00004449 lncRNA upstream 568858 38749266 ~ 38760444 (+) False XLOC_002344
TCONS_00005933 lncRNA upstream 570093 38749366 ~ 38759209 (+) True XLOC_002344
TCONS_00005729 lncRNA upstream 577790 38749352 ~ 38751512 (+) False XLOC_002344
TCONS_00005731 lncRNA downstream 386745 39780561 ~ 39780849 (+) True XLOC_002357
TCONS_00005934 lncRNA downstream 515322 39909138 ~ 39917508 (+) True XLOC_002359
TCONS_00005935 lncRNA downstream 728558 40122374 ~ 40198832 (+) False XLOC_002361
TCONS_00005936 lncRNA downstream 728783 40122599 ~ 40134405 (+) False XLOC_002361
TCONS_00005937 lncRNA downstream 880442 40274258 ~ 40281002 (+) True XLOC_002361
TCONS_00004467 mRNA upstream 21483 39304422 ~ 39307819 (+) True XLOC_002353
TCONS_00004465 mRNA upstream 34577 39283985 ~ 39294725 (+) False XLOC_002352
TCONS_00004462 mRNA upstream 56271 39248911 ~ 39273031 (+) False XLOC_002351
TCONS_00004464 mRNA upstream 61858 39263827 ~ 39267444 (+) True XLOC_002351
TCONS_00004463 mRNA upstream 61864 39249035 ~ 39267438 (+) False XLOC_002351
TCONS_00004469 mRNA downstream 82616 39476432 ~ 39841419 (+) False XLOC_002355
TCONS_00004468 mRNA downstream 82616 39476432 ~ 39841419 (+) False XLOC_002355
TCONS_00004470 mRNA downstream 82784 39476600 ~ 39825708 (+) False XLOC_002355
TCONS_00004471 mRNA downstream 298425 39692241 ~ 39841419 (+) False XLOC_002355
TCONS_00004474 mRNA downstream 499623 39893439 ~ 39905253 (+) True XLOC_002358
TCONS_00004447 other upstream 645522 38683666 ~ 38683780 (+) True XLOC_002342
TCONS_00004441 other upstream 781097 38548089 ~ 38548205 (+) True XLOC_002336
TCONS_00004438 other upstream 840473 38488708 ~ 38488829 (+) True XLOC_002333
TCONS_00004421 other upstream 2181518 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004415 other upstream 2368612 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004472 other downstream 298561 39692377 ~ 39699487 (+) True XLOC_002355
TCONS_00004473 other downstream 366938 39760754 ~ 39760879 (+) True XLOC_002356
TCONS_00004486 other downstream 1156914 40550730 ~ 40550954 (+) True XLOC_002366
TCONS_00004487 other downstream 1161101 40554917 ~ 40555131 (+) True XLOC_002367
TCONS_00004493 other downstream 1206119 40599935 ~ 40600502 (+) True XLOC_002373

Expression Profile

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