Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00049938 |
| length | 697 |
| RNA type | processed_transcript |
| GC content | 0.49 |
| exon number | 5 |
| gene id | XLOC_025294 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 23221047 ~ 23239458 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0046849 | bone remodeling | biological_process |
| GO:0001501 | skeletal system development | biological_process |
| GO:0030198 | extracellular matrix organization | biological_process |
| GO:0035630 | bone mineralization involved in bone maturation | biological_process |
| GO:0031101 | fin regeneration | biological_process |
| GO:0030278 | regulation of ossification | biological_process |
| GO:0033333 | fin development | biological_process |
| GO:0033334 | fin morphogenesis | biological_process |
| GO:0033339 | pectoral fin development | biological_process |
| GO:0031012 | extracellular matrix | cellular_component |
| GO:0005581 | collagen trimer | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005201 | extracellular matrix structural constituent | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-9102 | Predicted to be an extracellular matrix structural constituent. Acts upstream of or within several processes, including bone mineralization involved in bone maturation; fin development; and fin regeneration. Located in cytoplasm. Is expressed in several structures, including head; integument; myotome; pectoral fin; and vertebra. Used to study osteogenesis imperfecta and osteogenesis imperfecta type 3. Human ortholog(s) of this gene implicated in several diseases, including Ehlers-Danlos syndrome arthrochalasia type 1; aggressive periodontitis; bone disease (multiple); cutaneous leishmaniasis; and dentinogenesis imperfecta. Orthologous to human COL1A1 (collagen type I alpha 1 chain). |
| ensembl_id | ENSDART00000140586 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00052650 | lncRNA | upstream | 22339 | 23096442 ~ 23213329 (+) | False | XLOC_025293 |
| TCONS_00052651 | lncRNA | upstream | 22339 | 23096722 ~ 23213329 (+) | False | XLOC_025293 |
| TCONS_00049935 | lncRNA | upstream | 22339 | 23096728 ~ 23213329 (+) | False | XLOC_025293 |
| TCONS_00052652 | lncRNA | upstream | 22339 | 23096772 ~ 23213329 (+) | False | XLOC_025293 |
| TCONS_00052653 | lncRNA | upstream | 22339 | 23113347 ~ 23213329 (+) | True | XLOC_025293 |
| TCONS_00052654 | lncRNA | downstream | 167013 | 23406471 ~ 23407478 (+) | False | XLOC_025296 |
| TCONS_00052655 | lncRNA | downstream | 167013 | 23406471 ~ 23411521 (+) | True | XLOC_025296 |
| TCONS_00052656 | lncRNA | downstream | 278501 | 23517959 ~ 23524650 (+) | False | XLOC_025298 |
| TCONS_00052657 | lncRNA | downstream | 278674 | 23518132 ~ 23524387 (+) | False | XLOC_025298 |
| TCONS_00052658 | lncRNA | downstream | 278678 | 23518136 ~ 23524387 (+) | False | XLOC_025298 |
| TCONS_00049933 | mRNA | upstream | 139527 | 23092762 ~ 23096141 (+) | False | XLOC_025292 |
| TCONS_00049934 | mRNA | upstream | 139537 | 23092813 ~ 23096131 (+) | True | XLOC_025292 |
| TCONS_00049932 | mRNA | upstream | 150389 | 23063718 ~ 23085279 (+) | False | XLOC_025291 |
| TCONS_00049931 | mRNA | upstream | 150389 | 23063718 ~ 23085279 (+) | True | XLOC_025291 |
| TCONS_00049929 | mRNA | upstream | 175547 | 23047241 ~ 23060121 (+) | False | XLOC_025290 |
| TCONS_00049939 | mRNA | downstream | 7867 | 23247325 ~ 23322787 (+) | False | XLOC_025295 |
| TCONS_00049940 | mRNA | downstream | 9084 | 23248542 ~ 23334469 (+) | False | XLOC_025295 |
| TCONS_00049941 | mRNA | downstream | 9084 | 23248542 ~ 23348084 (+) | False | XLOC_025295 |
| TCONS_00049942 | mRNA | downstream | 9246 | 23248704 ~ 23327611 (+) | True | XLOC_025295 |
| TCONS_00049943 | mRNA | downstream | 249194 | 23488652 ~ 23496223 (+) | True | XLOC_025297 |
| TCONS_00049913 | other | upstream | 666562 | 22568987 ~ 22569106 (+) | True | XLOC_025283 |
| TCONS_00049893 | other | upstream | 1174580 | 22059313 ~ 22061088 (+) | False | XLOC_025275 |
| TCONS_00049877 | other | upstream | 2204795 | 21025153 ~ 21030873 (+) | True | XLOC_025264 |
| TCONS_00049876 | other | upstream | 2204797 | 21025153 ~ 21030871 (+) | False | XLOC_025264 |
| TCONS_00049874 | other | upstream | 2555630 | 20679923 ~ 20680038 (+) | True | XLOC_025262 |
| TCONS_00049946 | other | downstream | 433919 | 23673377 ~ 23673455 (+) | True | XLOC_025303 |
| TCONS_00049951 | other | downstream | 454698 | 23694156 ~ 23696013 (+) | False | XLOC_025306 |
| TCONS_00049958 | other | downstream | 481193 | 23720651 ~ 23720745 (+) | True | XLOC_025311 |
| TCONS_00049974 | other | downstream | 855702 | 24095160 ~ 24101082 (+) | True | XLOC_025315 |
| TCONS_00049975 | other | downstream | 856499 | 24095957 ~ 24096036 (+) | True | XLOC_025316 |
