RNA id: TCONS_00049942


Basic Information

Item Value
RNA id TCONS_00049942
length 7439
RNA type mRNA
GC content 0.42
exon number 11
gene id XLOC_025295
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 23247325 ~ 23348084 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agaaagaggaggggGCAGGCGCGTCACACGCTCGTGGGGGGAAATCAAGAGGGCGAAAGCGGCTCGTGGACACAATGGATTTGCGAAGGAAAGGGCTTTGCGTTGATTAAAGGACGGAGTCTTCGATGAACACGAGACACAAGGAAGAGGAGAAGCAGAAGGCTATGCTGTTTCTGCTTGTCTTTACTGCTGTTTGATTAACCATGATGAAGACTGAACCCCCATCTGCAGCCAGCGGCAGCACCAACACCACCCTCGTAGCAAGAAGCGCATCTCCGCACAGGAACGCGTATGAGGCTGGGATTCAATCTCTCAAGCCAGTCACTGCTAATGGAGAGGATGGAAAACCCCGAATACTGGACCGGGGCCGCAGGTACGGCTCCAATGTGCACCGCATCAAGAATATGTTCATGCAGATGGGTTCTCCGGGGGATGAAGATGATCCGTCAAAGCCCAAAGACCTAGACCAGGGGGTCCGACTGTCCCTCCCCAGAGCAAGCAGTCTGAATGAGAATGTGGATCACAGTGCGCTGCTTAAACTCGGCGGGACTGTTTCAGAGCGGGTCAGCCGATTTGATGGGAAGACTGAAGGTAGCAGCTCCAGAGGATCAACCGCTGGATACTCCAAGCTGCAGGAGACGCGAAAGATATTTGAACAGCGCCACCTGCAGGAGAAACAGGCGGCCACTAATCGAATCCTGTTAAAGAAAGAGCGAGCGTCAGGGTTCCAGGACAGCCGTCTGGACGTGGTAGTTCGCTTCAATGGAAGCACAGAGTCATTGGACCGGCTGGATGCAGGGGACTGTCCCGCAGATGCAGTGTCCCCTACTGTCAGCCAGCTGAGTGCAGTGTTTGAGCGAGCAGATCAGCGCAACAGCCTTCCACGACCGTCCTCAACTTCCCCATTGCCTTCTCATGGGGCAGCCTCTACCTCAACCAAGGTGGAAGGAATCAGTTCCAAGACTGCCACCAAAAAGGCACGAAGCATCCCTCCGACAGAGAATAACGAGGCGAAAGACCAAGCAGGTGCTCCTGGAAGTCCGAAAAGCAGAACAAGCAGCCAACCTGATGCATCCAATAGCAAACCATCCGAGGATACAGCTTCTGGCAATACGGATAATATATCCAGGTCAGAGGAGATCCTGAATTCATCAGGCTGTGACTCCAAGCAAGGGGAGAATTCAGAACCAGGCTCTCCAGATCCAGGCAGCAGGCTGGTACAAGCGGATGTCCACGCCTCTCTGGAAAACGGGGAGGCCACAAGCAGCCATGATCCCTCAGAACAAAAGGAGGAAACTGAAGAGGCCTGTGCTGAGGAGGAATCCCACCGAGAGGATATCTCTGAGGCAGACCTGGTGGATATCAGCGCGTACAGCGGGATCGGGGAGGACTCCGGAGGCAGTCAGCTGGATGACGATGAGGAAGCTGAGGATGATGATGCTTACGAACCTGAATCCAGCTGTTCAGAAATCCCAGGACTGCCTGCGGAAGATGAACCTCCACCCAGCAGGAAGATTCGCTTCAGTGTAAACCCCATCAAGgttttcaCCACATACTCCAACGAGGACTATGACAGACGCAATGACGAGGTGGACCCCATGGCTGCTTCAGCCGAGTATGAGCTGGAGAAGAGGGTGGAGAGACTGGATCTGTTCCCAGTGGAGCTGGAGAAAGATAAAGACGGATTGGGAATCAGCATCATTGGGATGGGTGCCGGCGCAGACATGGGGCTGGAAAAACTGGGAATCTTCGTAAAGACGGTGACTGAGGGAGGAGCTGCACACCGAGATGGAAGGATCCAGGTGAATGATTTGATCGTGGAGGTGGACGGGACCAGTCTGGTGGGTGTGACGCAGAATTTCGCTGCATCAGTCCTCAGGAACACCAGCGGCACTGTCAAgtttGTGATTGGCCGAGAGAAGCCGGGGGAACAGAGTGAAGTGGCCCAGCTGATCCAGCAGACTCTGGAGCAAGAGAGATGGCAGAGAGAGATGATGGAGCAGCGCTACAACCCCTACATGGAGGAGGATGAAGAGACGGGTGAATGTGCCACCGATGAAGAGGAAGAGATGAGCCCCATGTTTCCTAATGCCATTGAGGTGTTTGATCTGGCAGAGAATGAAGACATGCTCTCTCCTGTGGAGATGGACCCAGAGAAACTGGCTCACAAGTTTAAGGAGCTCCAGATCAAACATGCTGTGACTCAGGCTGAGATCCAACAGCTCAAGAGGAAGCTGGCTCACGCCGAACAGGATAAGCTGCGCTGGAGGATGGAGAGGGCTCAGCTGGAGCAGACGGTGAGGGAGAATAAGGAGCGCATGGAGAAGTTGGAGGGTTATTGGATGGAGGCTCAGAGCTTATGCCAGGCAGTTGATGAGCACCTGAAGGAGACGCAGACCCAGTACCAGGCACTGGAGCGCAAGTACAGCAAAGCCAAACGCCTCATCAAAGAGTACCAGCAAAAgGAGATTGAGTATTTAAAGAAGGAGACAGCACAGCGCAGAGCACAAGAGGAGACTGAGGCCAGCCACAAGGTGGAGACAAAAAACCTCCAGGAGAAGATTACTGACTTGGAGTCAAAGGTTGGCGCTCTGAAGAGTCTGGAGCCTTCGTAAGCCTTCCGCTGTGCGAAATAATGGAGATCTGACGACAGAAACGCCTTGAACTTCACCCCACTCTTCCCTCCAGCCACATTCCCCCTCCATGACCTGAAGAACTCCAGGACACACGAGGGGATGTTCCCGGGGACAGAGACGGGACAAAACAAACACTGTACCAGACGCCCGAGGGACGTCTAGCCATCAGGAGGCccttttttatagtcatttagtCATTTTCTCCTTGTTTCTTTATAAGCGCCCTTACAGGTATTCTAAACCTCTCTGCAGGAATGTACAAACCTCTTCATTCATTACACGCTTGCAGGAGAAGAAAGAACAGATGAAATGGAGAGGCAGTGACTGACAAGAGGACTGTTTGTATATATTCtggcatatatttaaatattaaaactgctTAAGCAATGTGCTGGGGTGGGGGGGTGAAGGGGTAAGGGCTTTACTTTTCACATCCAGGCAAATAATACAGTGAAAATGGTCCATTTTGTGCATGGCGAAGGAGAGGGGATTTTTTCTTAGCTTAAGGACGGCATTGGAAAACAGGGTGGGGAACGTGTAATCTTGACGTTTAGAGTTAGCAATCAGGGGTTTCTCATGTTTGCGTTCTGTGTAGGGTAATGGAAATGTAGGATGATGGGGCTTATGGGTAAAGAAACATCACCAGTTCAGTGCTTGTGGTTAGTCGATGCTCGTGTGCCTAGGTCAACCCTGTTACTCTGTAAGGTGACAGAGTAAGACTTGTGAATCAATCAGAAATATGGCCTTGTTTTATTGCTTCCCAAACCCTTTCGCCAGCCCTCTCTGTTTAAGCAGTGTGTTTACTCCAATGCATCGCTCTCCGGGGACCACGCTAAGTGCACTTGGACTGCGCTACAGAGAGTCCTGGAGAATGCTAACGTTTTATGGCTTTCTTTGTCCTCAGTCCTGCTGGACGTGGATTGATTCAGTATTATCAGTCGTATACAAGGATGTGGAATCTCCTTCTAGTTGTGTTGTGGTGATGGAAAGCAACATGGTCTCAAGGGAAAGTCTAACTGTTTTACATTTTGGCAAATTTATGGCAATTtaatttatatgaatttgtaCATTCGTCATGTTTCAATATGAACTTCTAGTTTTTAAGTTAGTATGAAATTGCCATCTTTAAGATAGTTAGGCTTTCTTGTGAAATcgggttgtttttgtgtttgtttgtttgttttttttgtcttaaatgtttttacatttttaaaaaatcgtaTTCCTGGGAAAACTGGAGTCTTAACAGCAAGTGAATGAGTTTAAGGCTTTAATTATTATCCGTTTTGTCAAATCAAATCCACAGAAATAAGAATTTTTGAAGTAAAAATGTCATGAAAACGTTTTTGCTTGAAGTATTTAAGGGTCTTGTTCCACAGAACATGTTCCCAtgtcagaaaagtattgttttcAACCATTGCCTTTGGCTTATTTAGGTGCTTTGTCTCTCATTTCAAATGGAAAAATCGTGTGAACAGCACTTGAAAAATCGTTTTTCAAATTTACTTTCTTCGACGTCCCGTAAATTAACCAAAAAgagaattatttgttttttttaaatgctggaaAACTCCCATTCACAGCGCAGTATTGAAAATTCTTCCATATTTCTTCTGAAAGTATTTACTTTTTCAGGTTTTACAATCTTTAATcatcatttctttaattttttgtattaatttacatTGGTTGATAATGTAAAGCAGCAAAGTGATGCAGCGGTCACACtttgagcttgtgaaattctgCTCTACAGTGAgcaattgctccatatttaaaatatctgtccagaaaggtcatgttcTGATTTTTGATTAGTCTCATGCACTCACGCGATGTggtttcacaggtcagagtttaccaagcttgaactttgcaatgcagcaaactgcaaaacttgtcgtacgagcttgcgtttccaggTCTGCTGCATTCGCTTGCGTATGAAGTCTATGAGTTGAAAAGTCACCACGGCTTAACAGCAGCAGTTTTGTGGAATGATATGTTCAAGCAACACACTCTAGGAGTCCTAAAATCATAATTTGTGGCATAATTTATACGTCAGTCATCTTAAGCTGCAATTAGACGGCATTTATCTGACTTTCGCAGTCACAGTTAACTAAAATCATTTTTCTGTCAGATGagaaactttattttttggctCCAATAATTATGGGACTATTATCTCAATTTTAGTAATTTCTTGGCTGTTTAACCCTGATAGCACATCAGTGTTCTCTAGCAACCAAGTACAACTTGACTGAAAGGATACCgcaattatatatttatgtatatagttCTTAAAAACAAACCCATTTTTGAGGGATTTTTGGTTTTTATTTGCACAATGTGAGAGAAACCTTGTGTTGCGTCTAAACGGCATAACATCGACGTTAACAATGCTAATCGATTTGGTgttgaaaacattgacattttttgacatccacacattgatgcccttttgaccaccaaaatatcaaCACACAACGTGTTGCATAAGAAATGTTTCTTATCTGAAAGAGTCAATTTCAAATTTACAATTGATTTTGTATTCTTACAATGCAtataaactaccttgatgtcaaaatggcGTCTAATATTGGCGTCAAAGACAGGACAGTCCTGTAAagtatttttgatgtgtttttgatgcttttgatgctgaatgtgtgtgagatgtcaatttgatgtcaaaacaacatctaaCAATAGTCAAAAACGCAACAAAAATCTCATTTTAGAAGTCAATTCGATGTTGTTTTTACATCAATTCATGTAAGCTACATAAAATTGACGTATCCCTACAATAAACGTAAACTATATTGATGTCAAAACAGCATctaattgacatctaaaattAGCGTCAAATCAGGACAGTCTTGTAAAtgatttttgatgtatttttgatgCTAGTATCAGATGTCAAAACGACATTTAACACTAGCgtcaaaaaacagataaaaaatctaatttcagACATCAACTAGATGATGTTTTTACATCAATGCATGTAAACTATGTCGAATTGACATCTAAAATTTGCGTCAAACCAGGACAgtcctgtaaatgttttttttgatgtttttgacGCTAGTggtagatgtcaatttgatgttgttttgacattaaaCTGATTAACATGTTTTTGATGTTGTTGATATTGCACTAGTATAGAAGGACATTCGGAAAGATATGCGAACAAAATGGTCGTATTTACAtcaaactaacatctaaaattaGCGTCAAATCAGGAGAGTCTAGTAAATagtttttgatgcattttagACTCTAGTGTTTGATGTCAATTTGATATCAAAATAGTTAATTGACATTGAATCGAtaagcatattttaaaaatgtttttgatgtCATTGATGCTAGTCAAACATgaatttgatgtcaaaacgacatctaACACTAgcatcaaaaacacatcaaaatctaaatttagacgtcaattttatgttgttttggcATCAATGCATGTAAGCAACATCAAATTGGCGCCAATTGAATTGACTAGCatgtttttgaagtgtttttgATGTCGCTAATATTGTATGAATGATATACgaacaaaattgtcacatttactatttattttgtatccctacaatgcatgtaaactacaATAATGTCAAAACAACAGCAAATTGACGTCTAAAATTAGCGTCAAATCAGCAGTCTTGTAAATGATTTTTGATGCATTTCTGACTCTAGTGTTTGTCAATTTGGTGTCGTTTTGATGTCAATGTAGTTAATTGACATTAAACcaattagcatatttttaaaatgtttttcatgtTATTGACTGGTATAGAAGACTGGACTGGTATATTCGGAAAGATATACGAACAAAATGACCATATTTACAATGGATTTTGTATCCCTACAATGCATATGAACTACATTGATGAtgaaacaacatcaaattgacgtcTAATGTTGGCGTCAAAAACAGGACAGTACTGTAAAtgatttttgatgtgtttttgatgctagtttcaatttgatgtcattttgacataaaGGTAATTAATCGACATTAAACCGATTAGCAAATTTTTGAAAGAGTTTTTGATGTCGTTGACTGCGTAGAAGGACATTCGCAAAGATATCCGAACAAAATGGCCATAACTGCAGTGCATTTGAGCCTCTGTttgctgaaatatatatatttgtaaagagCTGACTAATACACAACCACCAAGTATGGATGTCCAGGCacaagagaaaactgaagtgGATTTGTCATGAGTCGCTGTAGAGAGCAAAGAAATGAGTTATGGTGGAAACGGACACTTTGAATCTTAGCTATAAACGCTTTTAAATTTCacactttagcttagcttagcttagctgcTGCCTTTAATGAAATGAATTTGCTTCCATGTACAGGAAAGAGCTTTGTGTTTCTCTCCTCGCTTGTTGGTGTAATAGTCAATTCCTCTTTATTTTTGGTGTCTAATGTTGCCGTTAAGCGAGCTGTTTAACAGAAATgcattgaggggaaaaaaagccTACAGTATGCGAAGACTTGAAGTTTGATTGTAATTGCCATAGTTTTACATTAGCGCATTTGTCTGACACCTAACATAAAGCAGGAATGCCATTGATTTTATAGTTGTTTTACAAACTCTTCGCCATTTCCTCTGTATTATTTTAGTCCCCTATTTTTTAACCCCTGCCATGTAAATTGCTACCACATGATCCAGAGGAAGATGTTCTCCATTTTCAAATAAGCGTCATGTTCAATAATTGCATAAGTACTGTCATAATAAATGCAGAAATGTGCTGAGCAAA

Function

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process
GO:0007015 actin filament organization biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0019722 calcium-mediated signaling biological_process
GO:0031175 neuron projection development biological_process
GO:0030425 dendrite cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008157 protein phosphatase 1 binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091006-1 Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization; calcium-mediated signaling; and neuron projection development. Predicted to act upstream of or within modulation of chemical synaptic transmission; nervous system development; and regulation of cell population proliferation. Predicted to be active in several cellular components, including actin cytoskeleton; dendrite; and postsynaptic density. Orthologous to human PPP1R9B (protein phosphatase 1 regulatory subunit 9B).

Ensembl:

ensembl_id ENSDART00000156032

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052651 lncRNA upstream 35375 23096722 ~ 23213329 (+) False XLOC_025293
TCONS_00052654 lncRNA downstream 78860 23406471 ~ 23407478 (+) False XLOC_025296
TCONS_00052655 lncRNA downstream 78860 23406471 ~ 23411521 (+) True XLOC_025296
TCONS_00052656 lncRNA downstream 190348 23517959 ~ 23524650 (+) False XLOC_025298
TCONS_00052657 lncRNA downstream 190521 23518132 ~ 23524387 (+) False XLOC_025298
TCONS_00052658 lncRNA downstream 190525 23518136 ~ 23524387 (+) False XLOC_025298
TCONS_00049937 mRNA upstream 10888 23221047 ~ 23237816 (+) False XLOC_025294
TCONS_00049933 mRNA upstream 152563 23092762 ~ 23096141 (+) False XLOC_025292
TCONS_00049934 mRNA upstream 152573 23092813 ~ 23096131 (+) True XLOC_025292
TCONS_00049932 mRNA upstream 163425 23063718 ~ 23085279 (+) False XLOC_025291
TCONS_00049943 mRNA downstream 161041 23488652 ~ 23496223 (+) True XLOC_025297
TCONS_00049944 mRNA downstream 326622 23654233 ~ 23655834 (+) True XLOC_025300
TCONS_00049945 mRNA downstream 341656 23669267 ~ 23671863 (+) True XLOC_025302
TCONS_00049947 mRNA downstream 349740 23677351 ~ 23682436 (+) True XLOC_025304
TCONS_00049948 mRNA downstream 360298 23687909 ~ 23690481 (+) True XLOC_025305
TCONS_00049938 other upstream 9246 23235668 ~ 23239458 (+) True XLOC_025294
TCONS_00049913 other upstream 679598 22568987 ~ 22569106 (+) True XLOC_025283
TCONS_00049893 other upstream 1187616 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049877 other upstream 2217831 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049876 other upstream 2217833 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049946 other downstream 345766 23673377 ~ 23673455 (+) True XLOC_025303
TCONS_00049951 other downstream 366545 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00049958 other downstream 393040 23720651 ~ 23720745 (+) True XLOC_025311
TCONS_00049974 other downstream 767549 24095160 ~ 24101082 (+) True XLOC_025315
TCONS_00049975 other downstream 768346 24095957 ~ 24096036 (+) True XLOC_025316

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000034_01957876_01995623.mRNA True 2395 mRNA 0.52 8 CI01000034 1957876 ~ 1995816 (-)