RNA id: TCONS_00052655


Basic Information

Item Value
RNA id TCONS_00052655
length 997
lncRNA type antisense_over
GC content 0.52
exon number 2
gene id XLOC_025296
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 23406471 ~ 23411521 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAATAATGTTACGATACTGTAAACAACCTGAAGCAAATGTAACAACCTGAATCAAGCGTGAGGGCtttgaaaatatttatgacaggACAGAGCTAAGAGGGACTCGTCTCACCTGTGCAGTTGGCGTACCGCTTTCCCGCCACGCTGTCCAGCAGCGCCAGCGCTAGGTTCTCTGGAGTGTCCGCGGGCAGAGGGGTCCAGTTCGTGTCCAGACTCGCCTCCGAGCTCTGCTCATCGCTGGACAGCGACGGGCTCCTGATGTCCGCAGTTGCGGAGGGCCAGCACGGCGCTTCTTCGGTCTCCGGACTGAACACCTCCCTCGCCGGGCCGCTCTCGGGAGACGTCTCCCTGAAGAATGGCACCACACGGGACAGGCTGGCCCGCCGTCTGGATGCCCCGGTGCCGGTAGCCTTCTCCCCAAAACCACCCGCCCGAGTGAGTGCATTGGTCTGCTTCTTCAAGAATTTTTCAAGAGGCTTCATTCCAGCCGGCATTTTGATGACAGAAATCAGAAGAAGGCCCTGGGTTGATCCTAATTAATACTCAATAAGGAACACTGATGATGAGCGTATTGCCGTGAGCGTCTACATCATAGCCGGATAATGCTGAAACTCGGATCGAGAAAATACCTGAAGAGACTCTGTTCTCCGCCGTGTTGAGGTGTCAAGAATAAAACACGGCCATTTTCAACGGTCCTCGTACACAAGTGATGCTGATGGAGTCCTTACTACgctaagaaaaaaaatccaaacgtATCCCTGGGAAACCCGTCCTCCACTGCAGTCCTTCAGCTCGAGGAGCAGCAGCCTATGTGTGGACGATCATCGCCACTGTCAAATAAAGCCGAGATCGATGAATCAATCAGACGAACAATCAGAATAAAGATGAAAATAGCAGCAGTTATGGAGCAAGTCTGTGATCAGCAGTGGAGAAAGTGGTCTGTCTGATGAACCGAGATGAACTCATTTGACTGCTTCCACACATCATTGGTGACTGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052651 lncRNA upstream 193142 23096722 ~ 23213329 (+) False XLOC_025293
TCONS_00052656 lncRNA downstream 106438 23517959 ~ 23524650 (+) False XLOC_025298
TCONS_00052657 lncRNA downstream 106611 23518132 ~ 23524387 (+) False XLOC_025298
TCONS_00052658 lncRNA downstream 106615 23518136 ~ 23524387 (+) False XLOC_025298
TCONS_00052659 lncRNA downstream 106616 23518137 ~ 23524387 (+) True XLOC_025298
TCONS_00052660 lncRNA downstream 192957 23604478 ~ 23616801 (+) True XLOC_025299
TCONS_00049941 mRNA upstream 58387 23248542 ~ 23348084 (+) False XLOC_025295
TCONS_00049940 mRNA upstream 72002 23248542 ~ 23334469 (+) False XLOC_025295
TCONS_00049942 mRNA upstream 78860 23248704 ~ 23327611 (+) True XLOC_025295
TCONS_00049939 mRNA upstream 83684 23247325 ~ 23322787 (+) False XLOC_025295
TCONS_00049937 mRNA upstream 168655 23221047 ~ 23237816 (+) False XLOC_025294
TCONS_00049943 mRNA downstream 77131 23488652 ~ 23496223 (+) True XLOC_025297
TCONS_00049944 mRNA downstream 242712 23654233 ~ 23655834 (+) True XLOC_025300
TCONS_00049945 mRNA downstream 257746 23669267 ~ 23671863 (+) True XLOC_025302
TCONS_00049947 mRNA downstream 265830 23677351 ~ 23682436 (+) True XLOC_025304
TCONS_00049948 mRNA downstream 276388 23687909 ~ 23690481 (+) True XLOC_025305
TCONS_00049938 other upstream 167013 23235668 ~ 23239458 (+) True XLOC_025294
TCONS_00049913 other upstream 837365 22568987 ~ 22569106 (+) True XLOC_025283
TCONS_00049893 other upstream 1345383 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049877 other upstream 2375598 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049876 other upstream 2375600 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049946 other downstream 261856 23673377 ~ 23673455 (+) True XLOC_025303
TCONS_00049951 other downstream 282635 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00049958 other downstream 309130 23720651 ~ 23720745 (+) True XLOC_025311
TCONS_00049974 other downstream 683639 24095160 ~ 24101082 (+) True XLOC_025315
TCONS_00049975 other downstream 684436 24095957 ~ 24096036 (+) True XLOC_025316

Expression Profile

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