Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00049949 |
| length | 903 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 2 |
| gene id | XLOC_025306 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 23691847 ~ 23696208 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0009952 | anterior/posterior pattern specification | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-000329-2 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; mesoderm; neural tube; somite; and tail bud. Orthologous to human HOXB7 (homeobox B7). |
| ensembl_id | ENSDART00000078453 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00052661 | lncRNA | upstream | 23650 | 23665161 ~ 23668197 (+) | False | XLOC_025301 |
| TCONS_00052662 | lncRNA | upstream | 23650 | 23666387 ~ 23668197 (+) | True | XLOC_025301 |
| TCONS_00052660 | lncRNA | upstream | 75046 | 23604478 ~ 23616801 (+) | True | XLOC_025299 |
| TCONS_00052658 | lncRNA | upstream | 167460 | 23518136 ~ 23524387 (+) | False | XLOC_025298 |
| TCONS_00052663 | lncRNA | downstream | 234466 | 23930446 ~ 23967966 (+) | False | XLOC_025313 |
| TCONS_00049968 | lncRNA | downstream | 238912 | 23934892 ~ 23967966 (+) | False | XLOC_025313 |
| TCONS_00052664 | lncRNA | downstream | 238961 | 23934941 ~ 23965038 (+) | False | XLOC_025313 |
| TCONS_00052665 | lncRNA | downstream | 238984 | 23934964 ~ 23962671 (+) | True | XLOC_025313 |
| TCONS_00052666 | lncRNA | downstream | 425221 | 24121201 ~ 24133485 (+) | True | XLOC_025317 |
| TCONS_00049948 | mRNA | upstream | 1366 | 23687909 ~ 23690481 (+) | True | XLOC_025305 |
| TCONS_00049947 | mRNA | upstream | 9411 | 23677351 ~ 23682436 (+) | True | XLOC_025304 |
| TCONS_00049945 | mRNA | upstream | 19984 | 23669267 ~ 23671863 (+) | True | XLOC_025302 |
| TCONS_00049944 | mRNA | upstream | 36013 | 23654233 ~ 23655834 (+) | True | XLOC_025300 |
| TCONS_00049943 | mRNA | upstream | 195624 | 23488652 ~ 23496223 (+) | True | XLOC_025297 |
| TCONS_00049953 | mRNA | downstream | 2017 | 23697997 ~ 23749910 (+) | False | XLOC_025307 |
| TCONS_00049954 | mRNA | downstream | 2054 | 23698034 ~ 23749406 (+) | False | XLOC_025307 |
| TCONS_00049955 | mRNA | downstream | 7724 | 23703704 ~ 23705746 (+) | True | XLOC_025308 |
| TCONS_00049956 | mRNA | downstream | 11711 | 23707691 ~ 23710095 (+) | True | XLOC_025309 |
| TCONS_00049957 | mRNA | downstream | 14859 | 23710839 ~ 23723599 (+) | False | XLOC_025310 |
| TCONS_00049946 | other | upstream | 18392 | 23673377 ~ 23673455 (+) | True | XLOC_025303 |
| TCONS_00049938 | other | upstream | 452389 | 23235668 ~ 23239458 (+) | True | XLOC_025294 |
| TCONS_00049913 | other | upstream | 1122741 | 22568987 ~ 22569106 (+) | True | XLOC_025283 |
| TCONS_00049893 | other | upstream | 1630759 | 22059313 ~ 22061088 (+) | False | XLOC_025275 |
| TCONS_00049877 | other | upstream | 2660974 | 21025153 ~ 21030873 (+) | True | XLOC_025264 |
| TCONS_00049958 | other | downstream | 24671 | 23720651 ~ 23720745 (+) | True | XLOC_025311 |
| TCONS_00049974 | other | downstream | 399180 | 24095160 ~ 24101082 (+) | True | XLOC_025315 |
| TCONS_00049975 | other | downstream | 399977 | 24095957 ~ 24096036 (+) | True | XLOC_025316 |
| TCONS_00049977 | other | downstream | 438577 | 24134557 ~ 24137908 (+) | True | XLOC_025318 |
| TCONS_00050021 | other | downstream | 1430476 | 25126456 ~ 25132231 (+) | True | XLOC_025346 |
