Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00049961 |
| length | 593 |
| RNA type | mRNA |
| GC content | 0.53 |
| exon number | 3 |
| gene id | XLOC_025307 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 23697997 ~ 23771945 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0009952 | anterior/posterior pattern specification | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0048704 | embryonic skeletal system morphogenesis | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-990415-104 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification; embryonic skeletal system morphogenesis; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including ectoderm; hindbrain neural keel; nervous system; neural crest; and pharyngeal arch. Orthologous to human HOXB3 (homeobox B3). |
| ensembl_id | ENSDART00000131410 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00049952 | lncRNA | upstream | 34901 | 23694156 ~ 23696208 (+) | True | XLOC_025306 |
| TCONS_00052661 | lncRNA | upstream | 62912 | 23665161 ~ 23668197 (+) | False | XLOC_025301 |
| TCONS_00052662 | lncRNA | upstream | 62912 | 23666387 ~ 23668197 (+) | True | XLOC_025301 |
| TCONS_00052660 | lncRNA | upstream | 114308 | 23604478 ~ 23616801 (+) | True | XLOC_025299 |
| TCONS_00052659 | lncRNA | upstream | 206722 | 23518137 ~ 23524387 (+) | True | XLOC_025298 |
| TCONS_00052663 | lncRNA | downstream | 183972 | 23930446 ~ 23967966 (+) | False | XLOC_025313 |
| TCONS_00049968 | lncRNA | downstream | 188418 | 23934892 ~ 23967966 (+) | False | XLOC_025313 |
| TCONS_00052664 | lncRNA | downstream | 188467 | 23934941 ~ 23965038 (+) | False | XLOC_025313 |
| TCONS_00052665 | lncRNA | downstream | 188490 | 23934964 ~ 23962671 (+) | True | XLOC_025313 |
| TCONS_00052666 | lncRNA | downstream | 374727 | 24121201 ~ 24133485 (+) | True | XLOC_025317 |
| TCONS_00049959 | mRNA | upstream | 7127 | 23721808 ~ 23723982 (+) | True | XLOC_025310 |
| TCONS_00049957 | mRNA | upstream | 7510 | 23710839 ~ 23723599 (+) | False | XLOC_025310 |
| TCONS_00049956 | mRNA | upstream | 21014 | 23707691 ~ 23710095 (+) | True | XLOC_025309 |
| TCONS_00049955 | mRNA | upstream | 25363 | 23703704 ~ 23705746 (+) | True | XLOC_025308 |
| TCONS_00049949 | mRNA | upstream | 35129 | 23691847 ~ 23695980 (+) | False | XLOC_025306 |
| TCONS_00049966 | mRNA | downstream | 5676 | 23752150 ~ 23754831 (+) | True | XLOC_025312 |
| TCONS_00049967 | mRNA | downstream | 22424 | 23768898 ~ 23771142 (+) | True | XLOC_025307 |
| TCONS_00049969 | mRNA | downstream | 303569 | 24050043 ~ 24065393 (+) | False | XLOC_025314 |
| TCONS_00049970 | mRNA | downstream | 313980 | 24060454 ~ 24071582 (+) | False | XLOC_025314 |
| TCONS_00049971 | mRNA | downstream | 316274 | 24062748 ~ 24070047 (+) | True | XLOC_025314 |
| TCONS_00049958 | other | upstream | 10364 | 23720651 ~ 23720745 (+) | True | XLOC_025311 |
| TCONS_00049951 | other | upstream | 35096 | 23694156 ~ 23696013 (+) | False | XLOC_025306 |
| TCONS_00049946 | other | upstream | 57654 | 23673377 ~ 23673455 (+) | True | XLOC_025303 |
| TCONS_00049938 | other | upstream | 491651 | 23235668 ~ 23239458 (+) | True | XLOC_025294 |
| TCONS_00049913 | other | upstream | 1162003 | 22568987 ~ 22569106 (+) | True | XLOC_025283 |
| TCONS_00049974 | other | downstream | 348686 | 24095160 ~ 24101082 (+) | True | XLOC_025315 |
| TCONS_00049975 | other | downstream | 349483 | 24095957 ~ 24096036 (+) | True | XLOC_025316 |
| TCONS_00049977 | other | downstream | 388083 | 24134557 ~ 24137908 (+) | True | XLOC_025318 |
| TCONS_00050021 | other | downstream | 1379982 | 25126456 ~ 25132231 (+) | True | XLOC_025346 |
| TCONS_00050056 | other | downstream | 2398291 | 26144765 ~ 26151560 (+) | False | XLOC_025372 |
