RNA id: TCONS_00049957


Basic Information

Item Value
RNA id TCONS_00049957
length 529
RNA type mRNA
GC content 0.49
exon number 2
gene id XLOC_025310
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 23710839 ~ 23723982 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCAGTAGGCCACTACAGTGCCAGTGTCTAGTCAGTGAATGTCTCTCCGGTTCTACCCATTTGAAAGCGGAAATATGGATACTGAACCGTGTACACTCAAATGAGCCCGAACTATTCAGGGGGTGAACCAAAGCGCTCGCGCACAGCGTACACGAGGCAGCAAGTCCTGGAATTGGAGAAAGAGTTCCATTACAACCGCTATCTGACCCGCAGAAGAAGGGTGGAAATCGCCCATACACTATGCCTATCTGAACGACAAATTAAGATTTGGTTTCAGAACCGGCGCATGAAGTGGAAGAAGGACCATAAGCTTCCGAACACCAAAATACGCAGTAACTCTGCAAGCACTAATTCAAGCGGCTGCCCGACATTGTGCAGCAATCAGAGCCGAGCAAGCGGACCTCCGCCAAGTCTATAGCCCTCCACTGATGACCAAGCacgtacaattataaaagaaacattttctgGAGTGTAGAACGTGGATTTTACCCGCGTTGTGTCTCCCTACTCTCCCCTGCACATTAGAAAC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001501 skeletal system development biological_process
GO:0007275 multicellular organism development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0048704 embryonic skeletal system morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0033613 activating transcription factor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-105 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification; embryonic skeletal system morphogenesis; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including hindbrain neural keel; nervous system; neural rod; pharyngeal arch; and somite. Orthologous to human HOXB4 (homeobox B4).

Ensembl:

ensembl_id ENSDART00000151584

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049952 lncRNA upstream 14631 23694156 ~ 23696208 (+) True XLOC_025306
TCONS_00052661 lncRNA upstream 42642 23665161 ~ 23668197 (+) False XLOC_025301
TCONS_00052662 lncRNA upstream 42642 23666387 ~ 23668197 (+) True XLOC_025301
TCONS_00052660 lncRNA upstream 94038 23604478 ~ 23616801 (+) True XLOC_025299
TCONS_00052659 lncRNA upstream 186452 23518137 ~ 23524387 (+) True XLOC_025298
TCONS_00052663 lncRNA downstream 206847 23930446 ~ 23967966 (+) False XLOC_025313
TCONS_00049968 lncRNA downstream 211293 23934892 ~ 23967966 (+) False XLOC_025313
TCONS_00052664 lncRNA downstream 211342 23934941 ~ 23965038 (+) False XLOC_025313
TCONS_00052665 lncRNA downstream 211365 23934964 ~ 23962671 (+) True XLOC_025313
TCONS_00052666 lncRNA downstream 397602 24121201 ~ 24133485 (+) True XLOC_025317
TCONS_00049956 mRNA upstream 744 23707691 ~ 23710095 (+) True XLOC_025309
TCONS_00049955 mRNA upstream 5093 23703704 ~ 23705746 (+) True XLOC_025308
TCONS_00049949 mRNA upstream 14859 23691847 ~ 23695980 (+) False XLOC_025306
TCONS_00049950 mRNA upstream 14973 23692462 ~ 23695866 (+) False XLOC_025306
TCONS_00049948 mRNA upstream 20358 23687909 ~ 23690481 (+) True XLOC_025305
TCONS_00049960 mRNA downstream 2549 23726148 ~ 23749910 (+) False XLOC_025307
TCONS_00049961 mRNA downstream 7510 23731109 ~ 23746474 (+) False XLOC_025307
TCONS_00049962 mRNA downstream 14196 23737795 ~ 23749910 (+) False XLOC_025307
TCONS_00049963 mRNA downstream 14616 23738215 ~ 23746412 (+) False XLOC_025307
TCONS_00049964 mRNA downstream 19269 23742868 ~ 23748060 (+) False XLOC_025307
TCONS_00049951 other upstream 14826 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00049946 other upstream 37384 23673377 ~ 23673455 (+) True XLOC_025303
TCONS_00049938 other upstream 471381 23235668 ~ 23239458 (+) True XLOC_025294
TCONS_00049913 other upstream 1141733 22568987 ~ 22569106 (+) True XLOC_025283
TCONS_00049893 other upstream 1649751 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049974 other downstream 371561 24095160 ~ 24101082 (+) True XLOC_025315
TCONS_00049975 other downstream 372358 24095957 ~ 24096036 (+) True XLOC_025316
TCONS_00049977 other downstream 410958 24134557 ~ 24137908 (+) True XLOC_025318
TCONS_00050021 other downstream 1402857 25126456 ~ 25132231 (+) True XLOC_025346
TCONS_00050056 other downstream 2421166 26144765 ~ 26151560 (+) False XLOC_025372

Expression Profile

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