Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00049974 |
| length | 387 |
| RNA type | processed_transcript |
| GC content | 0.49 |
| exon number | 5 |
| gene id | XLOC_025315 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 24094581 ~ 24111412 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006886 | intracellular protein transport | biological_process |
| GO:0006890 | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum | biological_process |
| GO:0006891 | intra-Golgi vesicle-mediated transport | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0015031 | protein transport | biological_process |
| GO:0030126 | COPI vesicle coat | cellular_component |
| GO:0005794 | Golgi apparatus | cellular_component |
| GO:0000139 | Golgi membrane | cellular_component |
| GO:0031410 | cytoplasmic vesicle | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-000406-5 | Predicted to be involved in intra-Golgi vesicle-mediated transport; intracellular protein transport; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi membrane and cytoplasmic vesicle. Predicted to be part of COPI vesicle coat. Orthologous to human COPZ2 (COPI coat complex subunit zeta 2). |
| ensembl_id | ENSDART00000139181 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00052663 | lncRNA | upstream | 127194 | 23930446 ~ 23967966 (+) | False | XLOC_025313 |
| TCONS_00049968 | lncRNA | upstream | 127194 | 23934892 ~ 23967966 (+) | False | XLOC_025313 |
| TCONS_00052664 | lncRNA | upstream | 130122 | 23934941 ~ 23965038 (+) | False | XLOC_025313 |
| TCONS_00052665 | lncRNA | upstream | 132489 | 23934964 ~ 23962671 (+) | True | XLOC_025313 |
| TCONS_00049952 | lncRNA | upstream | 398952 | 23694156 ~ 23696208 (+) | True | XLOC_025306 |
| TCONS_00052666 | lncRNA | downstream | 20119 | 24121201 ~ 24133485 (+) | True | XLOC_025317 |
| TCONS_00052667 | lncRNA | downstream | 33364 | 24134446 ~ 24145250 (+) | False | XLOC_025318 |
| TCONS_00049978 | lncRNA | downstream | 60787 | 24161869 ~ 24171230 (+) | False | XLOC_025319 |
| TCONS_00052668 | lncRNA | downstream | 61900 | 24162982 ~ 24182360 (+) | False | XLOC_025319 |
| TCONS_00052337 | lncRNA | downstream | 63837 | 24164919 ~ 24171071 (+) | False | XLOC_025319 |
| TCONS_00049970 | mRNA | upstream | 23578 | 24060454 ~ 24071582 (+) | False | XLOC_025314 |
| TCONS_00049971 | mRNA | upstream | 25113 | 24062748 ~ 24070047 (+) | True | XLOC_025314 |
| TCONS_00049969 | mRNA | upstream | 29767 | 24050043 ~ 24065393 (+) | False | XLOC_025314 |
| TCONS_00049965 | mRNA | upstream | 323215 | 23743139 ~ 23771945 (+) | False | XLOC_025307 |
| TCONS_00049967 | mRNA | upstream | 324018 | 23768898 ~ 23771142 (+) | True | XLOC_025307 |
| TCONS_00049976 | mRNA | downstream | 33336 | 24134418 ~ 24145250 (+) | False | XLOC_025318 |
| TCONS_00049980 | mRNA | downstream | 88722 | 24189804 ~ 24197270 (+) | False | XLOC_025320 |
| TCONS_00049981 | mRNA | downstream | 89125 | 24190207 ~ 24197268 (+) | True | XLOC_025320 |
| TCONS_00049982 | mRNA | downstream | 96852 | 24197934 ~ 24200819 (+) | True | XLOC_025321 |
| TCONS_00049983 | mRNA | downstream | 106161 | 24207243 ~ 24218622 (+) | False | XLOC_025322 |
| TCONS_00049958 | other | upstream | 374415 | 23720651 ~ 23720745 (+) | True | XLOC_025311 |
| TCONS_00049951 | other | upstream | 399147 | 23694156 ~ 23696013 (+) | False | XLOC_025306 |
| TCONS_00049946 | other | upstream | 421705 | 23673377 ~ 23673455 (+) | True | XLOC_025303 |
| TCONS_00049938 | other | upstream | 855702 | 23235668 ~ 23239458 (+) | True | XLOC_025294 |
| TCONS_00049913 | other | upstream | 1526054 | 22568987 ~ 22569106 (+) | True | XLOC_025283 |
| TCONS_00049977 | other | downstream | 33475 | 24134557 ~ 24137908 (+) | True | XLOC_025318 |
| TCONS_00050021 | other | downstream | 1025374 | 25126456 ~ 25132231 (+) | True | XLOC_025346 |
| TCONS_00050056 | other | downstream | 2043683 | 26144765 ~ 26151560 (+) | False | XLOC_025372 |
| TCONS_00050060 | other | downstream | 2093262 | 26194344 ~ 26194459 (+) | True | XLOC_025374 |
| TCONS_00050071 | other | downstream | 2209412 | 26310494 ~ 26319054 (+) | True | XLOC_025378 |
