RNA id: TCONS_00049985


Basic Information

Item Value
RNA id TCONS_00049985
length 1210
RNA type mRNA
GC content 0.40
exon number 7
gene id XLOC_025324
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24220354 ~ 24226028 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACCTGTAAATGACTTTCAATTGAATCAGTTTGGCCTGTTCTCGTCGTTTTTTCACTCAATAACAGGATTATTTGTCCACAGGTGCTCCAGCTCGATTCGTCCCATGGTGATCTGATTGGTTCATCATGTGGGCATGGGCATTGCTTCCTGTCTTTCTGGCAGTCTTTGGGACTGTTGGCCTTTGGGCTGTGTATGCCATAGCAGTTTCTAATAACTCTGTTAATATAACTATAGAGTTCCCTTACATCAGCACATGTGGTGCATACACCCCCCAGAGCTGCCTGTTTGCTCAGATATGCAACATTTGCTGTGTGTTAGctCTGTGGATTGTCGTGATCAGATTTCAGCAGATCCGTGATTTGGGCCGTTCATCTCATTTAAACACAGCTGGTCTGGTGCTTGGCTTCATCTCTAGCATTGGGATTTCTATTCTAGGAAACTTTCAGCAAACCATAATCCAAGAGGTTCATCTGCTTGGAGCACTCATGGCCTTCTTTCTGGGTTTAGCATACTTTTGGATCCAGGCCTTTATTACATATTTCAGCCCTCCATCACGTGACAATAAGTGGTTGGTTCCAGTGCGGTTCATCCTCTGCAGCCAGTGTACTTGTATGGTCATCTGCATGTTTGTCCTCCACAGCACAGGGTTTCGCTCTGCAGCTGCTATATGCGAGTGGATTCTGGTCATGTGTTTTTTTGCGCTGTTTGGGGTTTTTGCAGCAGAGTTCAGACACATTGACTTCCACAAGCTCACTGTACAAAAGGAGGGATTAAAAGTtgctaataatgataatgttGTGTGGACAGTACAGGACGTTCAGTGAAGAAGAGCTGGCAAGTTTTGGCTTTGGTAAttggaaacatacacacactcacacaagaaACAAAGTGTTATGACATTGAACTGTAACCTGCATGACTTTGCTAAATTCATAATTACAAACAACACTCCAATTTTATACCATATTACATAAACAAATCAGTTATATGAGAATCTTGCACTAAATTcttgtgtatatttttatattgttgtatTGATATGTTCCTTCAAAAGTTAGAATGGTATATAATGTTGAGAGAATGagacattttttgttttagctgtgtTGTATTGTATTTGGTTGTACAACAAACTAACCTCATCCTGGAGTTATTTTGTAGCCTTAATGATTTGTTTGCATGATGTCATTAAATATATTGTTCAAAGTG

Function

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0010506 regulation of autophagy biological_process
GO:0005764 lysosome cellular_component
GO:0005768 endosome cellular_component
GO:0000421 autophagosome membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0010008 endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051113-144 Predicted to act upstream of or within autophagy. Predicted to be located in autophagosome membrane; endosome membrane; and plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TMEM150B (transmembrane protein 150B).

Ensembl:

ensembl_id ENSDART00000078580

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052338 lncRNA upstream 2843 24217188 ~ 24217511 (+) True XLOC_025323
TCONS_00049979 lncRNA upstream 35928 24180633 ~ 24184426 (+) True XLOC_025319
TCONS_00052668 lncRNA upstream 37994 24162982 ~ 24182360 (+) False XLOC_025319
TCONS_00049978 lncRNA upstream 49124 24161869 ~ 24171230 (+) False XLOC_025319
TCONS_00052337 lncRNA upstream 49283 24164919 ~ 24171071 (+) False XLOC_025319
TCONS_00049990 lncRNA downstream 71720 24297748 ~ 24328904 (+) False XLOC_025326
TCONS_00049992 lncRNA downstream 212569 24438597 ~ 24452013 (+) True XLOC_025327
TCONS_00050010 lncRNA downstream 415461 24641489 ~ 24644485 (+) False XLOC_025338
TCONS_00052669 lncRNA downstream 704552 24930580 ~ 24932887 (+) False XLOC_025342
TCONS_00052670 lncRNA downstream 704614 24930642 ~ 24936255 (+) True XLOC_025342
TCONS_00049983 mRNA upstream 1732 24207243 ~ 24218622 (+) False XLOC_025322
TCONS_00049984 mRNA upstream 8082 24207382 ~ 24212272 (+) True XLOC_025322
TCONS_00049982 mRNA upstream 19535 24197934 ~ 24200819 (+) True XLOC_025321
TCONS_00049980 mRNA upstream 23084 24189804 ~ 24197270 (+) False XLOC_025320
TCONS_00049981 mRNA upstream 23086 24190207 ~ 24197268 (+) True XLOC_025320
TCONS_00049987 mRNA downstream 49569 24275597 ~ 24297419 (+) False XLOC_025325
TCONS_00049986 mRNA downstream 49569 24275597 ~ 24297419 (+) False XLOC_025325
TCONS_00049988 mRNA downstream 49738 24275766 ~ 24296514 (+) True XLOC_025325
TCONS_00049989 mRNA downstream 71454 24297482 ~ 24434452 (+) False XLOC_025326
TCONS_00049991 mRNA downstream 135068 24361096 ~ 24434905 (+) True XLOC_025326
TCONS_00049977 other upstream 82446 24134557 ~ 24137908 (+) True XLOC_025318
TCONS_00049974 other upstream 119272 24095160 ~ 24101082 (+) True XLOC_025315
TCONS_00049975 other upstream 124318 24095957 ~ 24096036 (+) True XLOC_025316
TCONS_00049958 other upstream 499609 23720651 ~ 23720745 (+) True XLOC_025311
TCONS_00049951 other upstream 524341 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00050021 other downstream 900428 25126456 ~ 25132231 (+) True XLOC_025346
TCONS_00050056 other downstream 1918737 26144765 ~ 26151560 (+) False XLOC_025372
TCONS_00050060 other downstream 1968316 26194344 ~ 26194459 (+) True XLOC_025374
TCONS_00050071 other downstream 2084466 26310494 ~ 26319054 (+) True XLOC_025378
TCONS_00050085 other downstream 2845745 27071773 ~ 27074132 (+) True XLOC_025389

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000034_01286141_01289408.mRNA True 1632 mRNA 0.38 5 CI01000034 1285074 ~ 1289408 (-)