RNA id: TU1995329


Basic Information

Item Value
RNA id TU1995329
length 1315
RNA type TUCP
GC content 0.42
exon number 5
gene id fcer1g
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45444361 ~ 45449712 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCAACCGATGTGCTGGTTACTGACTGAGCAGTCTGACGTCTGGTAAAAAGAGCTTGTTGCCGCTGCCTACTGTTGTGGTGTGTCCTGTTGTATCCTTGTTGCAGTGACAATGGGAGGCAGATTCCAGGTTCTTTCAGCTCTTCCTCTGTGGTTGAGCTTTGGCAGCGCTGcGGCCCTGGTTGAGCCTCAGATCTGCTACatcctagacgccatcttgtttctGTACGGTATCATCCTTACCGTGCTATACTGCAGGATCAAGTATTTCCCACAGATGGCTCCGGTGACTGGGACAGCAAAGCCAGTGAATGCAGAGGAGAGCATCTATACGGGATTGACTCCTCATTCTGCAGACACCTACCAGACCATCGGTCAGAAGAAAGGATTGCACTAGTCGAGGATGAGTTGAAGAAAGAGAACGTTTGACTCTTTCCATGTGTTAAATCACTTTTGTCTTTCCAGGCATTTCCATTGCAtcttatgtattttatttaacagcTTTTGAGCGAAAATGTAACggtttttaaaaacatttatttgccATTCATATGTGAAAGCCTCCTTTGTATGTTGTGGCATGTGTCTCGAAAGAGAGAGAAACGTGAGAAGTGCAAAAGAGGGAAGAAGTTGAGCAGTGGGTAAAAATGTATTTACGATTTGGTTTGACAGTAGCTAGGTTTGCATCAAATTTTCGACAGATTTTCATGTAAATATGataaaatctgcataaaataatatgcgcattttcccaccagatatGTTTGACTGACTTTATGAGGATACAATCCTGTGCGTGACGACGTAGTGCacgtaaaaatatattttacggttaaattcccatgtaccgaatgaaaaatacaatttctatcgcattttcaactctgctGATAATtagtcacaaaaactgttgcattGAATAGCAAACGTACCCGAGTTGGTCTTGGcacatgcgctctagccaacacctagcagatacagtgcgggtaggctacctattatgagattattatgaaTAAGAGCGATATTATTTGTATTGGTCAAACCTAATCATCGTTCGTTATCTCAATAAGACCCTCGATGGTAATTGTATAGGAGCAAGCAAGCCAACACCTTGTacattcaccaccctgtgaagttcataatttatttaatctgtagccaaataaactgcatgctttcccgagaCGTAGTGGGAGACGTAGTGGGAGAACCACACAACATATAATTTCATGACCCACaaatttacttcgatatgatggttattatatcaatatttgcgcagaaaacgtttccaccgccatttctcacCGCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1995324 lncRNA upstream 17580 45422297 ~ 45426947 (+) True G1742371
TU1995205 lncRNA upstream 76315 45364584 ~ 45368212 (+) True il13ra1
TU1995260 lncRNA upstream 180913 45263230 ~ 45263614 (+) True G1742308
TU1995246 lncRNA upstream 200351 45230536 ~ 45244176 (+) True G1742298
TU1995105 lncRNA upstream 398882 45042866 ~ 45045645 (+) True G1742167
TU1995332 lncRNA downstream 31788 45480475 ~ 45521688 (+) True G1742379
TU1995372 lncRNA downstream 73440 45522127 ~ 45522440 (+) True G1742416
TU1995334 lncRNA downstream 76690 45525377 ~ 45525723 (+) True G1742381
TU1995336 lncRNA downstream 77665 45526352 ~ 45526612 (+) True G1742383
TU1995380 lncRNA downstream 85274 45533961 ~ 45534179 (+) True G1742420
XM_021577968.2 mRNA upstream 330 45432580 ~ 45444197 (+) True ndufs2
XM_021577966.2 mRNA upstream 25354 45379310 ~ 45419173 (+) False kirrel1a
XM_021577967.2 mRNA upstream 25354 45379310 ~ 45419173 (+) True kirrel1a
trnar-ucu-9 mRNA upstream 66445 45378009 ~ 45378082 (+) True trnar-ucu-9
XM_021577965.2 mRNA upstream 76315 45359504 ~ 45368212 (+) False il13ra1
XM_036957964.1 mRNA downstream 6972 45455659 ~ 45474914 (+) True nectin4a
XR_005038617.1 mRNA downstream 36560 45485247 ~ 45512431 (+) False LOC110500870
XM_036957965.1 mRNA downstream 36560 45485247 ~ 45517233 (+) False LOC110500870
XM_036957966.1 mRNA downstream 36560 45485247 ~ 45517233 (+) False LOC110500870
XM_036957967.1 mRNA downstream 36560 45485247 ~ 45517233 (+) False LOC110500870
TU1994553 other upstream 971963 44461382 ~ 44472564 (+) False LOC110500529
TU1994546 other upstream 992995 44446560 ~ 44451532 (+) True LOC110500528
TU1993553 other upstream 1231297 44212786 ~ 44213230 (+) True G1740752
TU1993210 other upstream 1917801 43524736 ~ 43526726 (+) True G1740453
TU1993165 other upstream 1974202 43469818 ~ 43470325 (+) True G1740412
TU1995333 other downstream 36585 45485272 ~ 45493952 (+) True LOC110500870
TU1995371 other downstream 100430 45549117 ~ 45555589 (+) True si:dkey-38p12.3
TU1996084 other downstream 190609 45639296 ~ 45639742 (+) True G1743043
TU1996124 other downstream 258455 45707142 ~ 45709950 (+) True G1743077
TU1997842 other downstream 1715217 47163904 ~ 47167654 (+) True G1744645

Expression Profile