RNA id: TCONS_00050689


Basic Information

Item Value
RNA id TCONS_00050689
length 2246
RNA type mRNA
GC content 0.49
exon number 11
gene id XLOC_025813
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 57948377 ~ 57979190 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttttttatttattttaaaaacaatttacactGAATgacttgtgtttttcttttaatagTCATTAAATAAGAGATCATTAAAAACTTTGTCTTTACATTTAAATTCTCCATACAAAAAAAGCACAATTGGACATTAAACAGCCCAATTTTAAAGCATAAATTCCAAATAATAGATGCATTTACAAAATTACGATAGGCTACTATTAATAAAGTAGTCATGTGCATTATAAGTTCCCTCGACGCCTGTAGATGCTCACGCTATTCTCTCtctatgtatttatatgtaagctattttttccaAAGTATGAGTGTCAAAAGAGACTTATTCTCACTCTATAAATTCGCGTGGATTAGGAAACAGCCATTTCAATGCCAATAAAAGCTACCACATCAAGCAAAATATCGCAGTTCAAAACGACCAAACTAtgggcatttttttttcttcaataaacGAAGAGGACAGGAATCAGTAGTGCGACTGGATCACGCCCCGCCGCACTGCCCTCCACAGCGATTGGCTGAAGGGAAAGAGAGCAGGGTTAAAACCCAGAGCGGTTCAATGCACAGGTGCTACAGCGCAACACAAGAGCCCGAGGAGAGGCTTTAGGTCAGCGCAGGAGAGAACTTGGAGGACTTGTGAATTCTGCTCACCTGTTCTGCCGTGTTGACTCagtgtttgtttgcttttaaatTTTGCCTTGTGGTTCAGAAGATTCTCAGCATCACCTCCGGATTTTTGCGCGATGAAGAGGAGCCTCTGGGTGATGCAGGTCCTCCACTGGGCGGTGATGCTGGCTTTGGTTCAGTGCGGCGCGCTTGGTGCGCGGAGGTTCCGCGGAGGTCGAAACCCGCAGCCGCGGCGAGCGCTGCCCTCCGCTCATTACCGGGACCGCGGAGAGACCACCGAGAGCTTCTCACTGGATTTCACAGCCGTGGAGGAAAACATGGACAACTTCATGACTCAGGTGAAGAACCTGGCGCAGTCCCTCTACCCCTGCTCGGCCCAGAAGCTCGACTACGACATGAAGTTACACTTTCTGGAGAATACATCGGTCACCTGTAACGACGGGACTCCTGCGGGGTACTACCTGAAGGAGTCAAAAGGAAGCAAAAGATGGTTAATATTTCTTGAGGGCGGCTGGTACTGCTTCAACAAAGAGAACTGCGACAGCAGATACGAGACTATGAGGAGACTCATGAGCTCCTCCAAATGGCCACAAACCAAGACAGGCACAGGAATGCTGTCTTCACTCCCAGAGGAAAACCCACACTGGTGGAACGCCAACATGGTCTTCATCCCATATTGTTCAAGCGACGTGTGGAGTGGAGCCTCACCAAAAACAGATCAAAATGACTACGCTTTCATGGGTTCACTGATCATAAAGGAGGTCGTGAAGGATCTGCTCTCCAAAGGTCTGGATAATGCCAAGATCCTGCTGTTAGCTGGAAGCAGTGCGGGCGGCACCGGGGTCTTGCTGAATGTGGACTCGGTGTCAGAGCTTTTGGAAGAACTGGGCCACACCAACATCCAGGTCAGGGGTCTGTCCGACTCAGGCTGGTTTCTGGACAACAAGCAGTACAGATGCACTGACTGTGTGGACACCATCAACTGCGCCCCTACTGAGGTCATCAAGAGAGGAATCAAATATTGGGGTGGTGTGGTTCCTGAGCGATGCAGGCAGGCTTATGAAGGAAAAGAGTGGAACTGcttctttggatataaagtttatcctaccatCAAGCGGCCTGTGTTTATCGTGCAGTGGCTGTTCGATGAGGCTCAGCTCACGGTGGACAACATCCATCTGACGGGACAGCCTGTGCAGGAGGGACAGTGGCGCTACATTCAGAATTTGGGGACTGAGCTGAGGAACACTCTGAAGGACGTCCCTGCAATGTTTGCTCCAGCTTGTCTCTCACACGAATTCATCACAAGAAACTACTGGACCGATGTTCAAGTCAAAGGCACATCTCTACCGCGAGCGCTGCACTGCTGGGACCGCAGTCTACAAGACACCAGCAGAAATAACAAATCGCCCCCCAAAGGCTGTCCCGTGCACTTGATCGACAGCTGCCCGTGGCCTCACTGCAACCCCACATGCCCAACCATCCGGGATCAGTCTACAGGGCAGGAGATGAACGTCATCCAGTTCCTCATGCACATGGGCTTCGATGTCCAGAAGATGGCCCACCAGCAGGGAATGGACCCGAGTAAACTCCTGGGCATGCTCAGCAGTGGCAGCTAA

Function

GO:

id name namespace
GO:0021532 neural tube patterning biological_process
GO:0030178 negative regulation of Wnt signaling pathway biological_process
GO:1990697 protein depalmitoleylation biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0006507 GPI anchor release biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0052689 carboxylic ester hydrolase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:1990699 palmitoleyl hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120807-2 Predicted to enable palmitoleyl hydrolase activity. Acts upstream of or within GPI anchor release; negative regulation of canonical Wnt signaling pathway; and regionalization. Predicted to be located in extracellular region. Is expressed in several structures, including axis; hindbrain neural keel; midbrain hindbrain boundary; neural plate; and neural tube. Orthologous to human NOTUM (notum, palmitoleoyl-protein carboxylesterase).

Ensembl:

ensembl_id ENSDART00000047418

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052387 lncRNA upstream 179711 57766624 ~ 57768666 (+) True XLOC_025809
TCONS_00052814 lncRNA upstream 307287 57636374 ~ 57641090 (+) False XLOC_025808
TCONS_00052386 lncRNA upstream 307790 57636416 ~ 57640587 (+) True XLOC_025808
TCONS_00052812 lncRNA upstream 512073 57434261 ~ 57436304 (+) False XLOC_025807
TCONS_00052815 lncRNA downstream 2068 57981258 ~ 57986847 (+) True XLOC_025814
TCONS_00052816 lncRNA downstream 15188 57994378 ~ 57995547 (+) True XLOC_025816
TCONS_00052388 lncRNA downstream 157752 58136942 ~ 58137294 (+) True XLOC_025820
TCONS_00050700 lncRNA downstream 194887 58174077 ~ 58180383 (+) True XLOC_025821
TCONS_00052817 lncRNA downstream 208797 58187987 ~ 58192699 (+) True XLOC_025822
TCONS_00050687 mRNA upstream 118354 57825938 ~ 57830023 (+) False XLOC_025812
TCONS_00050686 mRNA upstream 124830 57820913 ~ 57823547 (+) True XLOC_025811
TCONS_00050685 mRNA upstream 131500 57797252 ~ 57816877 (+) True XLOC_025810
TCONS_00050683 mRNA upstream 131807 57779673 ~ 57816570 (+) False XLOC_025810
TCONS_00050684 mRNA upstream 152700 57788761 ~ 57795677 (+) False XLOC_025810
TCONS_00050690 mRNA downstream 11884 57991074 ~ 57991985 (+) True XLOC_025815
TCONS_00050691 mRNA downstream 18790 57997980 ~ 58006138 (+) False XLOC_025817
TCONS_00050693 mRNA downstream 18806 57997996 ~ 58006133 (+) True XLOC_025817
TCONS_00050694 mRNA downstream 113022 58092212 ~ 58097473 (+) True XLOC_025818
TCONS_00050695 mRNA downstream 140381 58119571 ~ 58131524 (+) True XLOC_025819
TCONS_00050688 other upstream 118458 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 308929 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050664 other upstream 2464730 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050662 other upstream 2649219 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050635 other upstream 3880738 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050692 other downstream 18800 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050699 other downstream 189333 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050717 other downstream 723130 58702320 ~ 58710755 (+) True XLOC_025845

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000112_02324515_02338662.mRNA True 2302 mRNA 0.49 12 CI01000112 2324389 ~ 2339089 (-)