RNA id: XM_036958014.1


Basic Information

Item Value
RNA id XM_036958014.1
length 7636
RNA type mRNA
GC content 0.54
exon number 50
gene id LOC110500876
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 47034102 ~ 47113062 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTATCCACCAAGCGGCGCTTGTGATCTCCCAATAAACCTCGGCCATCTCTACCATAGACTGTCTCAAGCTCAACTCTCCGTGCCGCTATTACTGCAAATGTATGTAGAAGATCGAGTTACAAGTACGCCCCATCTTTAAACTCTTGTCTATGCGCAGTTAGCCGAAGGACAACGGGACAGGCAATATACGTCCTATGCCAGCCGTCAGACAAGGGTCAACGCCTATGCCTTGACTACACTCTCTGGTTGATGGGCAGCTATCACATCTACCGGGAATAAAAGACATGATTGAGACAATGGATACCCAGCGTGCCTTGCAGGCAGTGGAGCGGCTCCAGGCCAAGCTGAAGGAGCGGGGGGAGGTCCCCACCGAGGAGAAGCTAAGCTTGCTCAAGTCGGTGCTCCAAAGCCCCCTGTTCCACCAGATTCTGGCCCTGCAGAAGTCTGTCCAGCTCCTCAAAGACCAGGGGGGTGGTGTCACAGCAACATTTGGCGGTGACCTGAGTGAATGCTACACAACAGCCCATGCCAATGGCGGCCATCTTGCCTACCCAGAATCCTCCACTGGTACACAGATCAATGGGAAGCCGTCTCCTGAGGAGTTTGAGCACATCATTCGCTCCATGGCTCAGgGGCGCTACGTGACACACATGGAACTGGTGAAGCCGCTGTCTGGGGGCCTAGGCTTCAGCGTGGTTGGTCTGAGGAGTGAGAACCGCGGGGAGCTGGGCATCTTCGTCCAGGAGATCCAGCCCGGGAGCGTGGCCCACTGCGATGGGAATCTGAAGGAGACAGACCAGATCTTGGCCATAGACGGTCAGCCCCTGGACCAGACAGTGACCCACCAGCAGGCCATAGGCATCCTGCAGAGAGCGTCTGAGTGTGTGCAGCTTACCGTGGCCAGAGGACCCATCCCTCAGCTGGCCAGCCCCGTGGTGTCCCGCACGCCCTCCGCTGCGAGCACCCTATCTGCCCACTCCAGTGCGGCCCACTGGAATCATGTGGAGACCATCGAGCTGGTCAACGACGGGACAGGCCTGGGCTTTGGCATTGTGGGAGGAAAGAACACCGGTGTCATTGTCAAAACCATCCTGCCTGGAGGCATCGCTGATCAGGATGGGCGTCTGCACAGTGGGGACCACATCCTCACGATTGGGGACACTGACCTTTATGGCATGGGCAGTGAGCAGGTGGCTCAGgtcctgaggcagtgTGGTAACAGAGTGAAGCTGGTCATCACTAGAGGCCCTCCAGAGGAGACCTCCGTCGTCCCAATGGCGTTGCCCACTGTCACAGAGCAACAGGGctatgaggaagaggaggctgaatCGTTCGACGTCGGGCTGACCAAGAACGCCCAGGGTCTGGGAATCACTATCGCCGGCTATGTGGGGGACAAAAATTCAGAGCCCTCTGGTATTTTCGTGAAAAGTATAACTAAAGACAGTGCAGTAGAGCAAGATGGCCGCATCCATGTTGGGGACCAGATCATAGCCGTGGACGGGATGAATATCCAGGGCTACACCAACCAGCAGGCCGTGGAGGTGCTGAGACACACGGGCCAGACGGTTCACCTGAAGCTGGTCAGAAGTGGCTTCCGTCCAGAGGACATCCCACCCGCTGTGGTGCCCAGTGTGATCGTACTTCCACCAACCCCAGGGGGCCGAGACCCCACACTGGAGAGAACAGATGTTGTGGACACCACCGCTCAAGGTGAGAAACAGTACCAGACATTGAGTGGGGAATCGGATGACTCCACTGTGAAGGATCAGTTAACTAAGAACACCAGAGACGAAGCAAAGTTAACAGAGGATGAAGAGTTGGAGCTGATGAAGAAGTGGCAGGAGACGCTCGGCCCCAGCAACAAAGTAGTGattgtccaggtggaaaagttCAGTGAGAGCAGTGGTCTGGGCATCAGTCTGGAGGCCAACAACGGGCACCACTACATCCGCTCTGTTCTGCCCGAGGGGCCAGTGGGCCGCTGTGGGAAACTCATCAGTGGGGACGAACTGCTCGAGGTCAATGGAATATCCCTGATTGGTGAGACCCACAAGGAAGTGGTGAGGATTCTGAAGGAGCTTCCTGTCTGTGTCTACATGGCCTGTTGTAGGCCCGCCCCTCTCCTTCAGAGTGACAGGGATTCTGGCCAAACAGGGTTGGATGAATTTTCCACTGAACCTAAAATTAAGATACAGGGAGACCTCAGCAGTTTCCTGGTTCCCGGAGGTTCCGAGGGGGCGGCAACAAGGGAAAATGTGACGGAGGAGACTCCGGGAGCTCCTTTGGCCATGTGGGAGACGGAAATACAGGACATCGagctggagaagggagagagtggACTGGGATTCAGCATCTTGGACTACCAGGACCCAATGGATCCGGCCAAGACAGTGATTGTGATTCGCTCTCTGGTGCCAGAAGGAGTTGCCGAACGGGATGGCAGGCTTTTGCCAGGCGATCGGCTCATGTTCGTCAACAGCACCAATCTGGACAACGCCAGTCTGGAGGAAGCCGTCCAGGCACTGAAGGGGGCCAACATCGGCATGGTTCACATTGGGGTGGCCAAGCCACTGCCTCCATACAATGAAGAGGACAGTCCGTCGTCATCCTCTGGAATCAGTTTTTTTTTATCTTCAACACTGCTGGTTAAAGAAAGCGATGAGGAGGAGCCAGCGGAGGACCACCTTTTCCGGGCAGAGCCTGCATTGATTGACTCCAATGAGGGAGACCTGACCGATGAGAGGGCATTGGAGCATCGCTTCTCTGGCAATGAGGATGACACCTTACAGGCATCCATGATCGCCCTGCACGGCAGCACATGCAGCGCCGATATGGACTACCAGACTACCTTGCAGTCCTCCACACCCAAACGGAGTGCTCGCCTGGACTTGTTGACTGAGCATCCCTTGGTGACGTTGTTCGGCCTTGCGGACGACACTGAACCCTTCTCCCCAGAGGAGAAGCCCATCGTTTTCCCCCTGCCCAGGAGTATTGGAGGTCACGCCCTAACGGTTGACGACAACGCACTAACTAGCTCCGATCAGTACCTGGCGCATCACTTAACCCAAATGGAGCCATCGGATCTGTCAAACTCATACAGTCCGTACACTGACCCTGAGCCTGGTTTGAATGATTTGGGGGAGCCGGTGCAGTCTCTCCATTTTCAGGTGGAGTCCACCATGGCCGTTGAGGACATAGGGGAGATGGAAGGCTTAATGAAGGGGGATGAGCCATCTGTAAAGCAGTCCAAAGAGGAAGGGGATGAGGTTATAATCACTGGGAGTCATTTTGAAAGGACAATCACTGTTGTCAAGGGCAACTCCAGTCTCGGAATGACAGTGAGCACAATCAAGGATGGCTTGGGCATGTACATCCGCAGCATCATCCATGGAGGTTCCATCAGCCGAGACGGCCGTCTGGGAGTAGGGGACCTAATCCTAGTCATCAACGGCGAGTCCATGGCCAACCTGACTAACACCCAGGCCCGCGCCATGCTCCGGAGACACTCCCTCATCGGGCCAGACTTGGGATCTGCTTGTGCCCCAGAGGAAGATCTGTGCCCTTTTTATGTcaTTACCTATGTCCCTGTGGAGTATCTGGAGGAGTATAAGACTAGCCTGGAGCAGCCTAAAGATGACATCTGCTCTGATGCACCTCTGGCCCCAATAAGAGGAATCCCAGAACTTCCTGAgcgggaggatggagagggagaggagagcgagtTACAGACCGCCACCTTCAGTAACTGGAACCAGCCTATGAAGGTGGAGCTCAAAAGAGAAGCGGGCAAGTCCCTTGGCATCAGCATTGTGGGGGGCAGAGGGATGGGCAGTCGCCTTAGCAACGGTGAGGTGATGCGGGGCATCTTCATCAAACACATCATGGCGGACAGCCCCGCCGGCCGCAATGGAACCCTGAAGACTGGAGATAGGATTGTTGAGGTGGACGGTGTGGACCTGAGTGATGCCAGTCACGAGCAGGCTGTGGAGGCCATCCGCAGGGCAGGAAACCCTGTAGTGTTCCTGGTCCAGAGTATCGTCCACAGGCCCAGGCCCAAGTCCCGCTATAGCCCCACTTCATCACCAGTCATAGAGTACAGCACCGCTTTAAAACGCTTGCCTCATCACATGTGCCAGTCCTCAACCACGGACACCAACGAGGAGAGAGTGGCGCGGCGCAATGGTGACAAGCCGCCAAAGCGGGAAGCGGGAAAGACATCGTCCAccactcttcacctctctcttcctgtggTTCCCCACGTTGGAGAGACAGACACGGATACTCTGACAGAGATTCCCGACAGACCGTCCCAGACAGAAGAGGAGGATAAGTTTGGCTACAGATGGAAGAACATCAGTCAGAGGTACGACAGCCTCCCAGGGCTTCTCCACATGAttgagctggagaaggggaagACTGGCCTGGGCCTTAGCCTGGCTGGCAACCGTGACCGCTCCCGCATGAGCGTGTTTGTGGTCGGGATCGACCCCAGTGGAGCCGCCGGCAAAGACGGTCGCGTTGTGGTCGGGGATGAACTGTTGGAGATCAACGGGCAGATTCTGTATGGGCGGAGTCACCAGAATGCCTCCTCCATCATTAAAAGTGCCCCATCGAAGGTCAAGATCATATTCATCAGGAACACAGATGCTCTCAACCAGATGGCTGTGGGACCAGTGAGGGAGCATGGAGACACACTGGAGCCCCAGacagagCTGGAAACATGTTCTTCCATTGCACCCTCGGCGATCGATGTCGACATGTTCAAATATGTGCAGCACGTCATTCTGCTGAAGGAGGAGGGTGGATTCGGCATCACTTTCAGTGAGGACACCAAGGATGGGCTTGTGATTCAGAGTATAACTGAAAAAGGACCAGCAGGAAAGGACGGCAGCATCAAATCTGGAGATAAACTCCTGGCTGTGGAGGATAAGCCAGTGATGGGCTACACTGTGGACAGGGTCCACTCTTTACTGAAGAAGGCCAAAAGCTCAGTGAAATTGACTATCTGCACAGACAAGTCATCGCCCCTTCTCCCTCACTGTACTGGTCAGGCAACCAGCCTAGCCAGCATTCATAGAATCTCCATGGCTACCCTGGGCCAGTCTGAGTCAGAGCCAATCAGGAGCTCTAGTCGCTCGTCCACCCCTGGCACTCTGGCTTCCTCTGACCCTGTGACCTGTCCCATCATCCCCGGCTGTGAGACCACCATAGACATCTCCAAGGGCCGCACAGGCCTGGGCCTCAGCATCGTGGGGGGCTGTGACACTCTACTGGGGACCATCATCATTCACGAGGTCTATGAGGACGGAGCTGCCTCCAAGGATGGGAGACTTTGGGCTGGGGACCAGATCCTGGAGgtGAATGGCATTGACCTGCGCGTCGCCACTCATGATGAAGCTATCAACGTGCTGCGCCAGACCCCTCAGCGGGTGCGTCTCAGTGTTTACAGGGACGAGGCTCAGTACAAGGAGGAGGACCTGTGGGATGCCTTCACCGTGGAGCTGAACAAGAAGCCCGGCCAGGGCCTGGGCCTCAGTATCGTGGGGAGAAGGAACGACACAGGGGTGTTTGTGTCCGACATAGTGAAAGGGGGCGTGGTGGAGAGTGACGGGAGGCTGATGCAGGGAGACCAGATCCTGTCCGTCAACAAGGAGGACGTCAGAAATGCCACTCAGGAGTTAGTGGCCGAGCTGCTGAAGTGTGGTGTGGGACCCATAGTGATGGAGGTGGGCAGATTTAAAGCCGGGCCCTTCCACTCTGAGAGGAGGTTCTCACAGAACAGTCAGATGAGTGAAACAGGCAGCTGCAAGGTGACCCCTCACTCTCTGTCAGCCTCCTCTGGAAGCCTCCAAGTGGACTGTGACAGCTTACAACACACAAATCAGGAGTCACTGGACCACCAGGAGATCAGAAGTGTTGAATTCACTAAGGGCCCCACTGATTCCTTGGGCATCAGTATTGCGGGTGGAGTGGGCAGTCCCCTGGGTGATGTGCCCATCTTCATCGCCATGATAAACCCTACTAGCCTCGTTGTCCAGACACACAAACTCAAGATCGGTGACGTTATCGTCAGTATCTGTGGGACTGCTACTGAGGGTATGAGCCACAGCCAGGCCGTCACCCTGCTGAAGAACGCCACCGGCACTGTGGTGCTTCAGGTGGTAGCAGGGAGTGATACCACAGTGACCGGCCCCTTTCATGAGCAGACCGCTACCGGACTCTCAGTCTCAGGTCTTACTGCTACTAGCATCTTCCACGATGACCTGGGACCTCCTCAATATAAGACCATCACACTGGACAGAGGCCCAGACGGACTGGGCTTCAGCATCGTTGGTGGCTTCGGGAGCCCACACGGAGACCTGCCCATTTATGTGAAAACCGTGTTCGGAAAGGGGGCAGCATCAGAGGACGGGCATCTGAAGCGAGGGGATCAGATTATGGCTGTTAACGAACAGAGTCTGGAGGGGGTCACCCACGAGGATGCCGTGGGCATCCTGAAGAGGACCAAAGGAACAATCACCCTGACTGTGCTTTCCTAGATGCACACATAGACAAAGAATCATACCTCGAGGTAGACACATATACACACCTAAAGAAATATATACTGTACAAGTATACTGAAATGTGAACACACACTACCATATGTTCCTAAGCGCTAACCTTGTTTTGTAGCAAGAAACACTGTGATCAATATTATTTGAAGCTACTGCGGGTAGACTGAAGTGTTCACTGGACACTGTGGCTCAGATCATCTATACTCTAGTTTTCTGTGCTCGGACATGGACTGTAGTGTTATGATATTTATGGTTAATAGCCCTTGAAGAGATTTCTATAGAATGAGGGCCATTATTTAAGGCTTTTGCTACTGTAAACTGCTGTCCGTCCACTTCTATATTGAAGTCACTGTGGATCTAGCGAAGAGACCGAGCAAGTCTAGACTCTTTGAATAACATTTCAATCATTTTTGAGTAAGGTTTTATCTGTGATGCAAAGCACCTTTTCAGAAGGGACATGGTCTGAAATCTTTGTTTTCTTGGTCAGAAGTTATACAGACCAAGGCGACGTGTGTGTACGTGGTCACAGTCAGGGAAaggagagtgtgtgtatgagacATTCACTGCTGCTAATGCATATGATGATGTGAAGCCTTGTTTTACACTATTTTAACGTTCaagtaatgttttttttctgtcatGATCGTACtttgtcataatatgatagaagGTGAAACCAGCCAACTTCTATGGTCTATCtcagtggtctccaaccctggtcctggagagctgctgggtatgcaggcttttgctccaacCTCGCACTTGCACAGCTGTTTCACATAATCAACCGTTGACATTCTTCAATATGGACCACGATTAGCCTAATCAAGTGTGTTAGTGTTGGGTTGGAGCAAAAGCCTGTACACCCGGTTACTCTTTGGTAGGAGTTGGTGCTCCCTATCTATCTCAAACATTAGCTGGATACCCCATGTTCTAGTTTCACAGTAATGGATCCCCTATTCAACATGGCGTCAGTCACATTCTTGTCACCCACCGTACATGTGTACTTAGTATTTCCAGCACAGTATTGAGTTGTTCACAGGCTGAATTAATAAAATGTACCTTCAAACCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1997624 lncRNA upstream 177354 46834804 ~ 46860989 (+) True G1744460
TU1997580 lncRNA upstream 268279 46769560 ~ 46770064 (+) True G1744417
TU1997509 lncRNA upstream 343436 46694693 ~ 46694907 (+) True G1744346
TU1997384 lncRNA upstream 416618 46620809 ~ 46621725 (+) True G1744226
TU1997338 lncRNA upstream 463706 46574329 ~ 46574637 (+) True G1744182
TU1997841 lncRNA downstream 50842 47163904 ~ 47236823 (+) False G1744645
TU1998181 lncRNA downstream 517566 47630628 ~ 47631885 (+) False G1744968
TU1998182 lncRNA downstream 517566 47630628 ~ 47631885 (+) True G1744968
TU1998184 lncRNA downstream 518542 47631604 ~ 47632823 (+) True G1744969
TU1998314 lncRNA downstream 712017 47825079 ~ 47826140 (+) True G1745093
XM_036958002.1 mRNA upstream 771421 46253219 ~ 46266922 (+) False LOC110500597
XM_036958029.1 mRNA downstream 255602 47368664 ~ 47958017 (+) False LOC110500605
XM_036958022.1 mRNA downstream 255603 47368665 ~ 47958017 (+) False LOC110500605
XM_036958028.1 mRNA downstream 255603 47368665 ~ 47958017 (+) False LOC110500605
XM_036958032.1 mRNA downstream 255603 47368665 ~ 47958017 (+) False LOC110500605
XM_036958035.1 mRNA downstream 255603 47368665 ~ 47958017 (+) False LOC110500605
TU1996124 other upstream 1328393 45707142 ~ 45709950 (+) True G1743077
TU1996084 other upstream 1398601 45639296 ~ 45639742 (+) True G1743043
TU1995371 other upstream 1482754 45549117 ~ 45555589 (+) True si:dkey-38p12.3
TU1995333 other upstream 1544391 45485272 ~ 45493952 (+) True LOC110500870
TU1995329 other upstream 1589656 45444527 ~ 45448687 (+) True fcer1g
TU1997842 other downstream 50842 47163904 ~ 47167654 (+) True G1744645
TU1999487 other downstream 981705 48094767 ~ 48095119 (+) True G1746210
TU1999753 other downstream 1212038 48325100 ~ 48363926 (+) True G1746471
TU2000589 other downstream 1864264 48977326 ~ 48977758 (+) True G1747255
TU2001181 other downstream 2332777 49445839 ~ 49446626 (+) True G1747814

Expression Profile