RNA id: XM_036958038.1


Basic Information

Item Value
RNA id XM_036958038.1
length 8220
RNA type mRNA
GC content 0.51
exon number 43
gene id LOC110500605
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 47368664 ~ 47958017 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGcgcacctctctctcgctcgcgcGCTCGAAGCCGCTCGGAGCCGTCGCCAGCAGTTGTAGGCTCCAATTTGACAGCAGCAGCGCTTGCTTTCTAAAGAAAGCTTAGCTCTCACTTTTCAGTCTGTCTCATTACCGCTCTCATTGTTTCTTTCGACAGCGAGAAACGGAGCAGTTCACTTGGAGTCTATTTGGAATAAGAAAGCATTGCTGTTTTCTGACTGGAGAGAAGGAAGATAAGACTCCTCTGGATTTCCTAAGGAATTTTATCTGAACGCCTTGTTACCGTGGCTTTTGAATTCATCAGCTGGGGTATATAATGTGACCAACTGTTCCACAATAGGGAAATTCCGAGGAGTTCAGATTCTTTCATTCCTTCTGGTCCGAGGCAGCATTGGTATCAAGTGTTCCTAACAGgTGGGGGCATAGGGGTATTGGTCATACTGGTGTTGTTGGCGAGGACGAAGCTTGGGCATCGGGCAGAATGTTGCCACCTGCATGAGTGGAACAGAGGAGCCTCAGTTCTGGTTCTCTTTCCTGAGACAACAACCACAGGATGAGGCTTGAGAGGAGGTCTCAGGAGAGAGAATGTTCCATGACTTTCACACCTTCAACCTCAAGCTCTTGAATCATTGGGACAGTTGCTTGGGTGCTTGAAGGCTGTGAATATCCTGCATCTGAGAAATCAGACCACTGAGGCTGCCAAAGCATGCTGGTGCCAAGCTGTCCCATGATGCACATAGCCAGACCCGTGCTGCTCGTCCTgggtcttctcctcctcctcgccaACGCCGAAACACCACCAAAGTTTTTAAGAACCCCCAATGACCAAACAGGCGTGCAAGGAGGCGTGGCGTCCTTCATTTGCCAAGCGACGGGAGACCCACGCCCCAAGATCGTTTGGAACAAGAAGGGGAAGAAAGTCAGCAACCAGAGATTTGAGGTGATTGAGTTCGATGACGGCTCTGGCTCGGTGTTGAGAATTCAGCCCTTGCGTACGCCCCGAGACGAAGCCATATACGAGTGCGTCGCCTCCAACACTGTTGGAGAGCTGAGTGCAACTACGAGACTCACTGTTTTACGTGAGGACCAACTGCCTGCTGGTTTCCCCACCATTGACATGGGCCCCCAGTTGAAAGTGGTAGAACGAACTCGCACGGCCACCATGCTCTGTGCCGCCAGCGGCAACCCTGACCCAGATATCTCCTGGTTCAAAGATTTCCTGCCcgtcaacaccaccaacaacaatgGACGCATCAAGCAGCTCAGATCAGGGGCCCTCCAGATTGAGCAGAGCGAAGAGTCCGACCAGGGGAAGTATGAGTGCGTCGCCACTAACAACGATGGAACCCGCTATTCTGCCCCCGCCAATCTATATGTTAGAGTGCGCCGGGTACCCCCGCGGTTCTCCATCCCGCCCACGGACAACGAGATCATGCCTGGAGGCAGTGTCAACATCACCTGTGTGGCGGTGGGCTCCCCTATGCCCTACGTCAAATGGATGCTGGGTGCCGAAGACCTGACGCCCGAGGACGACATGCCCATTGGACGAAACGTTTTGGAGCTCACTGACGTCCGCCAGTCGAACAACTATACCTGCGTGGCCATGTCCACTCTGGGGGTCATCGAGGCGGTAGCGCAGATCACAGTGAAAGCATTGCCCAAGCCTCCCGGCATTCCCGTGGTGACGGAGCGCACGGCCACGAGCATCACGCTGACGTGGGACTCAGGCAACCCTGAGCCTGTCTCCTACTACATCATCCAGCACAAGTCCAAGTTCTCAGAGGACACATACAAGGAGATCGACGGCGTGGCCACCACTCGCTACAGCGTGGGCGGCCTCAGTCCTTACTCGGACTATGAGTTCCGGGTGCTGGCGGTGAACAACATCGGGCGTGGGCCACCCAGCGAGGACATCGAGGCCAAGACGGCTGAGCAAGCACCCAGCACGGCGCCCAGGCAGGTCAGGGGTCGTATGCTCAGCTCCACCACGGCTATTATCCACTGGGACGAACCAGAGGAGGCCAACGGGCAAATTATGGGCTACCGTGTCTACTACACCATGGACTCTGCGCAGCAAGTCAACACATGGGAGAAGCAGATAGTGCGTGGATCAAACTTCCTCACCATTCAGGGCCTCATCCCCAACAAGACCTATTACATTAAGGTCCTGGCCTACACGTCCGTGGGTGATGGACCTCTCTCTGCAGATCTCCAGATCATAGCCAAGACGGGAGTCCCTTCTCAACCGACCGACTTCAAAGGGGAAGCCAAATCTGAAACAAGCATACTACTATCGTGGATAGCCCCAGCACAGACCGGACAAGACAATCAAATCATGGGATATGAACTTCTGTACAAGAAGGGGGATGACAAGGAGGAGAAACGCATCAGCTTTGAGCCTACCACCACGTACCTTCTGAAGGACTTGAAGCCCTTCACTACTTATACTTTCCAGCTAGCCGCGCGCAGTAAGCATGGTATCGGGGCCTACACCAATGAGATCTCCGCAGAAACCCCTCAAACACAGCCCTCAGCTCCACCTCAGGATATCAAGTGCTCTAGCCCCAGCTCCACCAATATCCTGGTAAGTTGGCGGCCTCCTCCTACGGACTTACAGAATGGGATCATAGTTAAGTATGCCGTCCAATACGCCGCCACTGAAGGGGAGGACACCACCACCCGAAAAATATCCGACATCCCTCCAGAAAGCTCCCAGTACCTCTTGGAACACTTGGAAAAATGGACGGAATACCGTGTGACAGTGACTGCTCACACAGATGTGGGTGAAGGACCTGAAAGCTTACCACAACTCATCCGCACCGAGGAGGATGTTCCCAGCGGCCCGCCTCGTAAAGTCGAGGTGGAGACTGTCAACTCTACGTCAATAAAAGTAATCTGGCGCTCGCCGATGCCCACCAAGCAGCATGGGCAGATCCGAGGGTACCAGGTGCACTATGTCAGGATGGTTAATGGGGAGCCCATGGGACAGCCAGCCATCAAGGACATCTTGATTGACGATGCGCAGTGGGAATATGATGATTCAACTGAACATGAAATGGTCATCACAGAGCTGCAGGCTGAGACTATGTACTCAGTTGCTGTGGCAGCCTACACGACAAAGGGAGACGGAGCTCGCAGCAAGGCCAAGCTGATCACCACCACTGGCGCAGTACCTGAAAAACCACGACTCATGGTCAGCCCCACCAATATGGGCACTGCCCTCCTCCAATGGCACCCCCCGGCTTTAACCCACGGCCCCCTGCACGGCTACCGCCTCCGCTTCGGCCGCAAAGATGTCGACCCTCTGACCATCATTGAGTTCCCAGAGCGTGAGAACCATTACACTACCAAAGAGATCCACAAGGGGGCATCATACACCTTCCGCTTGTCCACCCGTAACAAGGTGGGCTTCGGCGAGGAGACGGTCAAAGAAATCAGCACACCTGAAGATATGCCTAGCGGCTTCCCACAAAGCATTGTAGCCGAGGGTGGCACTACTACCACCATTCAGGTGAGCTGGAATCCACTGTTACTGGCGGAGCGCAACGGCGTTATCGTGAAGTATGCCCTGCAGTACAAGGACATCAACAGCCCTCGGAGCCCCTCGGAACTCTTCATCACCGCTCCGGAGTCCACCATCACCCTTGACAGCCTCAAGGCAGACACCACTTACGATATCAAAATGTGTGCCTTCACCAGCAAAGGCTCCGGCCCCTATAGCCCCAGTGTCCAGTTCAGGACACAGCCCTTGGATCAAGTGTTTGCAAAAAATTTTCATGTGAAAGCTGCCATGAAGACAGCTGTGCTCCTCACCTGGGAGATCCCAGACAACTATAATGCAGCTCAGCCCTTCACAATCCTTTATGATGACGGCCAGAGCGTGGAGGTGGACGGCAAGCTCACTCAGAAGCTGATCACGGGTCTGCAGCCCGAGACACAGTACTCCTTCCTGCTAACCAACCGGGGCAATAGCGCTGGCGGTCTCCAGCACCGCGTCTCCACCATGACCGCCCCTGACATCCTGCGCACCAAGCCCTACCTGATTGGCAAGACCAACTTGGATGGCAAAGTCACTGTAGAGCTACCCTCAGTCCAGACTTCAGAGAAAGTCAGGGGATACTACATAGTGGTGGTGCCTCTGAAGAAACAGCGCACAGGAAAGTTCCACAAACCCTGGGATAGTCCAGATGAGATGAACCTAGAAGAGCTGCTGAAAGAGATTAACCGAACAAGCCGAGGCCTTCGCTTCCGGAGGCAAGCTGAGCCCAAAGCCTACATCGCTGCCTACTTCAAAGACCTTCCCACCGACTTCACTCTGGGAGACACCAAGATCTATGGTGACTTTGAAAACAAGCAGCTCGCCAACGGCCAAGAGTACATCTTCTTTGTGCTTGCTGTCCTCGATATCTCTGAAAATaCCATGTATGCCACAAGCCCCTACTCTGACCCTCTTGTGTCAGCTGACCTTGACCCCCAGCCAATCATTGACGAGGAGGAGGGACTTATCTGGGTGGTGGGCCCAGTGCTCGCTGTTGTCTTCATCATCTGCATCGTCATCGCCATCCTCCTGTACAAGAGCAGCAAACCAGACAGGAAAAGGGCAGAATCCGAAGCTAGAAAGGGCAGTCTGCCCAACAGTAAGGATATGCTGTCTCATAACCCCACCGACCCTGTGGAGCTTCGACGCATGAACTTCCAAACGCCTGGTTCAGGTGACCCTAGTTACCCCAGTAACTTCCATTTGTCAAGCATGGCCAACCACCCACCAATCCCCATTTTGGACCTGGCCGATCATCTGGAGCGATTGAAAGCCAACGACAACCTGAAGTTTTCACAAGAATACGAGTCCATCGACCCCGGGCAGCAGTTCACGTGGGAACACTCCAACCTGGAAGTCAACAAACCAAAGAACAGATATGCTAACGTGATAGCATATGACCACTCCAGAGTCCTGCTATCAGCTATTGACGGTATCCCTGGAAGTGATTACATCAACTCCAACTACATTGACGGCTACAGGAAGCAGAATGCGTACATCGCCACGCAGGGCTCGCTGCCTGAGACGTTTGGCGACTTCTGGAGGATGATCTGGGAACAGCGGAGTGCCAACATCGTCATGATGACCAAGCTGGAGGAGAGATCGAGGGTGAAATGTGACCAGTACTGGCCCACTAGAGGGACGGAGACCTACGGCCTCATCCAGGTGACACTGTTGGACACGGTGGAGCTGGCCACATACTGCGTCAGGACATTTGCACTTTATAAAAATGGCTCCAGTGAGAAAAGAGAGGTGAGGCAGTTCCAGTTCACAGCCTGGCCGGACCACGGGGTACCCGAGCACCCCACTCCGTTCCTGGCCTTCCTAAGACGGGTCAAAGCCTGTAACCCCCCAGACGCAGGGCCGATGGTGGTACATTGCAGTGCCGGGGTGGGCCGCACGGGCTGTTTCATCGTGATCGACGCTATGCTGGAGCGCATCAAGCACGAGAAGACAGTGGACATCTACGGCCACGTGACGCTGATGCGCGCCCAGCGGAACTACATGGTGCAGACGGAGGACCAGTACGTGTTCATCCACGACGCGCTCCAGGAAGCCGTCACCTGCGGCACCACTGAAGTGCCCGCCCGAAACCTCTACACCTACATCCAGAAGCTGACTGGGATTGAGGGCGGAGAGAACGTAACTGGCATGGAGCTGGAGTTCAAGCGTTTAGCCAACACTAAAGCCCATACCTCGCGATTCATCAGTGCCAATCTCCCCTGCAACAAGTTCAAGAACCGCCTTGTGAACATAATGCCATACGAGTCCACGCGAGTGTGTCTTCAGCCAATCCGAGGGGTGGAAGGCTCCGACTACATCAATGCCAGTTTCATAGATGGATACAGGCAACAGAAAGCCTATATTGCCACGCAAGGGCCGCTAGCGGAGACGACAGAGGACTTCTGGAGGATGCTCTGGGAGCATAACTCCACCATCGTAGTCATGCTAACGAAGCTCCGAGAAATGGGCAGGGAAAAATGCCACCAGTATTGGCCAGCAGAGAGGTCGGCCAGATACCAGTACTTTGTGGTGGACCCCATGGCTGAGTACAACATGCCCCAGTACATCCTGAGAGAGTTCAAAGTGACTGACGCCAGGGACGGACAGTCACGGACGGTAAGGCAGTTTCAGTTTACAGACTGGCCCGAGCAAGGAGTGCCAAAATCGGGAGAGGGATTCATCGATTTCATTGGCCAAGTTCATAAAACAAAAGAACAGTTTGGCCAAGATGGGCCTATATCTGTCCATTGTAGTGCTGGTGTGGGTAGGACCGGTGTCTTCATCACCCTCAGCATCGTATTAGAGCGAATGAGGTATGAGGGCGTGGTGGATATCTTCCAGACAGTGAAAATGCTCCGGACACAGAGACCGGCCATGGTGCAGACAGAGgATCAATACCAGTTCTGTTATAGAGCTGGTTTGGAATACCTTGGAAGCTTTGACCACTATGCAACGTAAGAGTCCCTCTCCCGGAGGAAAAGCAGAAGGCCCTTGGACAACCCCAGCGAGCCTCTCTTCTGAGCCATAATTTCCTGCTTGAGAAAGTACTTCTTAACTCCTAACTAAAGACTCAGTTTAGgtctagattcaatcagatcaagtgtTAACCGGCGATAGCAGACACCCGCATAGCAGATGTTTTGGcagtgtcggaggtggaactgcgttggagcagtcaaatcggtgagcagctgctcttgcgaGCCTTGTCATGAAGCCACACCCACCCCACTCGCATTAGAAGTTCAGAGCGagaatgtgtaggctatatggaAATAATTACACTCAAATAGAAAAATCATTAAAGGAAATAATGAGGGTTTCTATCATCAAAATGGAGGTGTAGATTttatctcacattccagtgttccaacttgtaaacaaggctgcattgGAATTCTGTTAATGCGACAACATGCAGGCCATGGCAATGCCCACTTTAGGTGTAATGCCGGGAGCCACCTGtgaatttgacagctctaacgcagttccacctccaACACCGTCAAAACAACCACTACACGGATGTcggctaaagcggatctgattgaatagagccctaagtgTTAGATGTGAGACACAAAAATTTCAAAAAAATCATAAAGATTATTCCTGGAGGACCAAGTGTTTCCCAAAACCCATGGAACTCATCCTGACACGGGAAACAGAGAGGGAATCCTGACTGTTGAAGCATCTTATGGAATTATTTTTTTTCTGTTGCTTCAAGGATTCGTCTTGGGTTAAAAAATACTgaaagaaacacaaacaaaataaTAACACAACGTACTATTACATCGACAAGTAATGCATCATATTACGAACcacaagagagagaaatggaggcaCACAGAATGGCTTAAAACTTGATGCACATTGTAAAGAGACATTTCTGTTCCACAATCAAACGACACAGAGACATCTATCCTTTGAAAAAGAAGACACCAGTGCTTGGTCCACTATGAAAAAAATACCCTGTTTCCTGTCGCAACGTTCATCATTTAAAGAATTGGGGGGGGAAAGGGGGAATGTTTAAAGATATATGAAACAAATAAAACCTATTGATTTAGTTTTTTAGTACTTTACTATACAGTTGATATGTGCTTTATTTTAAACTGTGTGAAATTTGATTTCCTTTTTTTATTAACAAAACGTATCACTCGACAAAGTGAATCAAACAAAGTATTTGCGTAATCGTTCACTTTTCTCTTCCGAGTTGTATTTTTTTAAGCTGTAGAACTGTTCTAATGTATGCACCGTCATGCAGAGAAAAGTCTTTGCTCTTTTACTTATTCTTGCAAATTTTGGGGGTTTGTTTGTCTCAATATGTGCAGTCCTGTATTCACACTACCAAATGTTGACTTTGCTACAGgttttttttttagttttgtCTTATTTGTCCAATATCGGATACACAATAACTTACTTACACACTCATGCGATAAACTGGGGGCTTTGTGGAATCAACAGGGATGAGCAAAGTATGAAGTTGCTGCTACCGATTATCTTAGTTCTTCCATGTTAGAATGAAGGTAAAGATGAGCACCTGATGGATAAGATACGTGATATATACATATTTATGGTATATAGAAGATGACAGATATGAATGATATATGAATTATAATATGATCATAACCTATAACATATGTCTACTGAAATAAAGTACATATATAAAACGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1997841 lncRNA upstream 131843 47163904 ~ 47236823 (+) False G1744645
TU1997764 lncRNA upstream 255604 47064323 ~ 47113062 (+) True LOC110500876
TU1997624 lncRNA upstream 507677 46834804 ~ 46860989 (+) True G1744460
TU1997580 lncRNA upstream 598602 46769560 ~ 46770064 (+) True G1744417
TU1997509 lncRNA upstream 673759 46694693 ~ 46694907 (+) True G1744346
TU1997994 lncRNA downstream 2566 47960583 ~ 47961550 (+) True G1744793
TU1998395 lncRNA downstream 6942 47964959 ~ 47965199 (+) True G1745174
TU1998396 lncRNA downstream 7304 47965321 ~ 47965630 (+) True G1745175
TU1999331 lncRNA downstream 24389 47982406 ~ 47982633 (+) True G1746056
TU1999338 lncRNA downstream 30597 47988614 ~ 47988923 (+) True G1746063
XM_036958016.1 mRNA upstream 255604 47038343 ~ 47113062 (+) False LOC110500876
XM_036958068.1 mRNA downstream 424837 48382854 ~ 48414134 (+) False LOC110500610
XM_021578063.2 mRNA downstream 429300 48387317 ~ 48414134 (+) False LOC110500610
XM_036958069.1 mRNA downstream 429300 48387317 ~ 48414134 (+) False LOC110500610
XM_036958070.1 mRNA downstream 429302 48387319 ~ 48414134 (+) True LOC110500610
XM_021578094.2 mRNA downstream 1635369 49593386 ~ 49605877 (+) False LOC110500624
TU1997842 other upstream 201012 47163904 ~ 47167654 (+) True G1744645
TU1996124 other upstream 1658716 45707142 ~ 45709950 (+) True G1743077
TU1996084 other upstream 1728924 45639296 ~ 45639742 (+) True G1743043
TU1995371 other upstream 1813077 45549117 ~ 45555589 (+) True si:dkey-38p12.3
TU1995333 other upstream 1874714 45485272 ~ 45493952 (+) True LOC110500870
TU1999487 other downstream 136750 48094767 ~ 48095119 (+) True G1746210
TU1999753 other downstream 367083 48325100 ~ 48363926 (+) True G1746471
TU2000589 other downstream 1019309 48977326 ~ 48977758 (+) True G1747255
TU2001181 other downstream 1487822 49445839 ~ 49446626 (+) True G1747814
TU2001255 other downstream 1648136 49606153 ~ 49609580 (+) False LOC110500625