RNA id: XM_021578063.2


Basic Information

Item Value
RNA id XM_021578063.2
length 4727
RNA type mRNA
GC content 0.52
exon number 24
gene id LOC110500610
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 48382854 ~ 48414134 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccttaaccacactgctagtCTTATgccgaaccctaaccttaattttAAAAAAGCAAATATTTGTTTTCATGGATTTTTACGATATCGGCGATTCTTACTTTGTGGCTGGGGTAACTAGTGACAACATGGCATAGGGACCGGTGCTGTGTTGGAGTTTGACGTGGCACTCCGCTTTCACGATCAGGAATTCAGAGTAGAGGACTCGGCAGATACTCGCCAGAATACAGGTTCTTGGATCTCTGCCATTTTGGAATGAGAAGACCTTAACAGCATTTAGGATGAGTCAGCAGGGTTATGTTGCCACGCCTCCATACTCCCAGGCCCAGCCTGGGATGGGGGGCTACCCAGCTGGGTTTGGGAGTTCGCCTGCCCAGCCCCTCTATGGACATTATGGGGGACAACCTCAGTCATTCCCAGCCCCACCAACAGGTTTGATGAAGCCTGTGTCATCCCCCTCCGGCATGCCTCCGTCAGAGGTCTCCAGCCAGTATGGCTCAAACATTCAGCAGAATGGAGCTCACCCTCAAAGGTACCCTGcccctcctgctgctgctgccgcctCTCCGTATGGACAACCCCCTAATTCCACCTACCACACCATGGCCCCCCAGGCCCCAGCACAGCAGCTCACCAATCAGATGGGTTCCATGAACCTCGGATATGGTCCAGGGCCCATGCAGAACCCTCAGgcaccccccacctctcccccagCCCAGCAGCCATTCCAGACTGCCCCTCCCCCAACCATGGGACAATCAACCCTGGGCCCCCCACCTGCAGGCCCCCATTCACCCCAGATGGCTCCCCCACAGTCGCCCCTAGCTGGCCCATCTATGGGAGGGCACCCATCTATGGGAGGGCACCCACCCATGGGAGGCATGGGTAGGCCCTTCCCAGGCCCACCCCCTCCAGGCTCTGGGGGCTTCCAGCAGCCTGGGCCTGGAGCAGCCGGACAACCAGGATACCCTCAGCAACCACAAGgtcagtttGGGGGGCAGATGGCGGGACCCTTCCAAGGTGGGGCAGCCCATATGTCCGGGCCACCTCAGAAAAAGCTGGaccctgactccatccctagcacAACACAAGTCACTGAGGACGACCAAGCCAAACGAGGAGGACAGGTGTACACCACAAACCTCAGGGGTCAGGTTCCCCCGCTAGTCACTACTGACTTTACTGTACAGGACCAAGGAAACGCCAGTCCAAGGTTCATGCGTTGCACCACCTACTCTTTCCCCTGCACGGCTGACCTGGCCAAGCAGTGCCAAGTTCCTTTGGGTGCCATCATCAAACCTTTCGCCACGGTGCCAAAGAATGAGACTCCTCTCTACGTCGTGAACCATGGTGAGACTGGCCCGATCCGCTGTAACCGCTGCAAAGCCTACATGTGTCCCTACATGCAGTTCATCGATGGCGGCCGCCGCTACCAGTGCGGCTTCTGCAACTGCGTCAACGAAGTGCCAACTTTTTATTTCCAACACCTGGACCACATGGGCAGAAGGGTGGATTTATATGAGAGGCCAGAGCTGTCGCTGGGGTCCTATGAGTTCGAAGCCACCCTGGATTACTGCAAGTCCCGGCCAGCTTTCAGCGCAAGCATCCGAGGTGAGCCGAGTCAGACTGTTACCGCGGAAACAAAACAACGGCCTGTGCTGTGTCCTTCATCCACATTCCTAACAAATGGAGGGCAGTCGGATGTCACAGTCTTAACGGCTCCAAGATCCAAGCAAGCTaaCAACAAGCCAGCCAGTCCTCCGGCGTACATCTTCATGATCGACGTGTCCTATGCCAACATCAAGAGCGGACTGGTCAGACTGGTATGTGAGGAGCTGAAGACCCTGCTAGACAACCTGCCCAGAGAGGATGGTGCCGAGAGCTCGACGGTGAAGGTGGGCTTCGTCACTTACAACAAGATCCTACACTTCTACAACGTGAAGAGTGCCCTGGCCCAGCCTCAGATGATGGTGGTGTCCGACACGGCCGAGATGTTTGTCCCACTGCTCGACGGCTTCCTCGTCAACTTCCAGGAGTCTCGCGCCGTCATCAACAATCTTCTGGACCAGATCCCTGATATGTTTGCAGACACCAACGAGAGCGAGACGGTCTTTGCCCCCGTCATCCAGGCTGGGGTAGAGGCACTCAAGACAGCAGAATGCAGTGGCAAGCTGTTCATCTTCCACTCATCCATCCCCACCGCCGAGGCCCCTGGGAAACTGAAGAACAGGGACGACAAGAAGCTGAtcaacacagagaaagagaagACTCTGTTCCAGCCCCAGAAGGGTGTGTACGAGCAGCTCTCCAAGGACTGTGTGTCTCAGGGTTGCAGCGTGgatctcttcctcttccccagCCAGTATGTGGACCTCGCCACCATGGGAGATgtccccacacacacaggaggcTCCATTTTCAAGTACAGCAACTTCCAGGTGGaaatggatggagagcatttccTGAGTGACCTGAGGAAGGATGTGGAGAAGGCCATCGGGTTTGACGCCATCATGAGAGTCCGCACCAGCACAGGCTTCAGGGCTACAAACTTCTTCGGTGCTATCCACATGAACAACACCACAGATGTGGAGATGGCTGCCGTGGACTGTGACAAGGCTGTGACTGTGGAGTTCAAACACGATGACAAACTTAGCGAGGAGACGGGCGCACTCATGCagTGTGCCTTGCTGTACACGACCGTCAGCGGCCAGCGTCGTTTGCGGATCCACAACCTCAGTCTGAACTGCAGCGCCCAGCTGTCTGAGCTATACAAGAGCTGTGAGACTGACGCCCTCATCAACTTCTTTGCCAAGTCAGcgtACCGTGCCATGCTGAACCAGCCCCTGAAGACGGTGAGGGAGATTCTGGTCAACCAGACGGCCCACATGCTAGCCTGCTACAGGAAAAACTGTTCCAGTCCCTCCGCTGCCAGCCAGCTGATTCTGCCTGATGCCATGAAGGTGTTCCCAGTCTACTTAAACAGCCTGATGAAGACTGGTCCCTTGGTGGGCAGCGCTGAGCTCTCTACAGACGACAGGGCTCACCAGAGACTCATCGCCACGGCCATGGGGGTGGAGGATACCCAGCTGCTGCTCTACCCACGCCTTATCCCACTGCACAATATGGATGTTGCCAGTGATGTGGTGCCAGCTCCAGTGCGCTGTTCTGAGGAGCGCCTGACAGATGCTGGCATGTTCCTGCTGGAGAATGGGCGCTCCCTCTTCCTGTGGCTGGGCCAGGCCTGCCCCCCAGAGCTGGTCCAGAGAGTCTTCAATGTGCCCTCCTTCACCCACCTGCCCGCTGACCTGAGCTCCCTGCCAGTTCTGGATAACCCACAGTCTAAGAAGCTGCGTTCCATCATTGACTCATTGCTTGACCAGAGGCCCAGCGCCATGAAGCTTCTGATCGTGAAGCAGAAAGACCGGTCTGAGATGCTGTTCCGCCAGCACCTGGTGGAGGACAAGGGGCCCCATGGTGGAGCCTCCTACATGGACTTCCTGTGCTACGTCCACTGCGAGATCAGACAAGTCCTCACTTAACACGCACCCCCCTGGATATCACCTCTTACAGAGAGAGTCCATAGCTGCCTTTCCAACAACTCTTTAACCCCTTATTCCACACAAACCTACAGGACCACCGTTCTCTCTTGAGTATCAGGATCTGTGCTCCAGTTTGCATTGTACATTTGTCTACATATGAGTCAGTCTGACTTCTTTAAGTGAACTGATTTCTATGTAAATTGGCCAATGGTTGTAAAAGGAATTGCTGGGATTCGGGACACATTAGACAGGTGGTTTCACTATTGAGTAAACCCAATTTTTATTAGTGTATATTTAGCTTTTTTATTGCCAATGTCTGTCTTTAAGCACATACATTCCTTGTCACAATTTCTCATTAGGGAAGAGTTGACAGAATTTCACAGCATCAAATGGTAATTTAGTCACATGGGTTGGAATAAACATCTGGTTGCCATGACTGAAAATTGGTGCCGTGGCTATTAAATTAATGGCTCACTTTACCATTAGTGATTGGATTCCATTGTTTTTCCATTCCCCTCAGGTATGGAGAGAATTTCCTAGCTAGATTATTGATACAAGGCCAAATCCAGTGACAACTCCCTGACAAACATGGGAAAAATAACCCCAAAAATGTTTCTGTAAAGATGAGATAAAAAATTCCACACTCTTAATTCCAATTGTATACCTTGGTTTTTCTCCAAGTTACTGCTTATGTCTCATTTACTGGCATTATCATTACTTTAATATATAAAGTCAATTATTGGTTGTATGTATGCGAGGAGGTTTTGGGGGAAATGGAGTTCCTGTGCCAGTTCAATCTGCcttcatttttttgttgtaaatatAGGCCATTAGTCTATTCCAGTGAGATACAGATTTCAATCTGTAAGGTTTGTATGCAAACATATCTCAGGTCATACCTAGCAATTGTGGTGCAGAGATGGGAAAACAGTGGCATAACTTGAATGGATGTATTCGAGTGAAGGGGCCTTGGAGTAGATTCTGAGCCTAAAGCCtataaatatatctatataaaaaatattgtttttgatTAAATTCCTGACTACATCAAGCTTTTGAGAAGTTATGTGCTTGTCTTATTTCCATTGAAATTCTCACTAACAATCTTGTTGAgtaccaaattgtcatacttgcGAAGTAAAGATACATCAATAAAGACTCAAGTAAAAGGGGAAAGTCACCCGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1999671 lncRNA upstream 145583 48241503 ~ 48241734 (+) True G1746393
TU1999643 lncRNA upstream 165511 48221547 ~ 48221806 (+) True G1746365
TU1999589 lncRNA upstream 206051 48180734 ~ 48181266 (+) True G1746311
TU1999588 lncRNA upstream 207595 48179509 ~ 48179722 (+) True G1746310
TU1999522 lncRNA upstream 264176 48122942 ~ 48123141 (+) True G1746244
TU1999891 lncRNA downstream 116149 48530283 ~ 48530663 (+) True G1746601
TU1999957 lncRNA downstream 194830 48608964 ~ 48707627 (+) True G1746665
TU1999991 lncRNA downstream 241940 48656074 ~ 48656446 (+) True G1746698
TU1999994 lncRNA downstream 243654 48657788 ~ 48658323 (+) True G1746701
TU2000053 lncRNA downstream 320269 48734403 ~ 48734660 (+) True G1746753
XM_036958058.1 mRNA upstream 429300 47368679 ~ 47958017 (+) False LOC110500605
XM_021578094.2 mRNA downstream 1179252 49593386 ~ 49605877 (+) False LOC110500624
XM_036958085.1 mRNA downstream 1179252 49593386 ~ 49605877 (+) True LOC110500624
XM_021578099.2 mRNA downstream 1191965 49606099 ~ 49609714 (+) False LOC110500625
XM_021578097.2 mRNA downstream 1191966 49606100 ~ 49609714 (+) False LOC110500625
XM_021578096.2 mRNA downstream 1191991 49606125 ~ 49609714 (+) False LOC110500625
TU1999753 other upstream 23391 48325100 ~ 48363926 (+) True G1746471
TU1999487 other upstream 292198 48094767 ~ 48095119 (+) True G1746210
TU1997842 other upstream 1219663 47163904 ~ 47167654 (+) True G1744645
TU1996124 other upstream 2677367 45707142 ~ 45709950 (+) True G1743077
TU1996084 other upstream 2747575 45639296 ~ 45639742 (+) True G1743043
TU2000589 other downstream 563192 48977326 ~ 48977758 (+) True G1747255
TU2001181 other downstream 1031705 49445839 ~ 49446626 (+) True G1747814
TU2001255 other downstream 1192019 49606153 ~ 49609580 (+) False LOC110500625
TU2001256 other downstream 1192019 49606153 ~ 49609580 (+) True LOC110500625
TU2002232 other downstream 2184776 50598910 ~ 50603277 (+) False LOC110500883

Expression Profile