RNA id: XM_021578094.2


Basic Information

Item Value
RNA id XM_021578094.2
length 2167
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110500624
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 49593386 ~ 49605877 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCAAACACCAAAAGTGGTACCGATCTACTTTCCCAGTGTATCGAgagggcttttattttgaaggtgaAAAACCGGAAGTTCAATTTGTGTGACGTACACGTACAGCTGTACACACTGTTGTTGACATATACGATTATATCTCCGTTAGCTCTAATAGTCCAAATAGTGTACTTTCAAAACATTACAGGTAGTTGGTTTAACTACTTTAAAATAGTTATTTGTAAGTCAACCTCGTGCATTATCAGGTACGAACATGACAATTCGGTAAAAGTAATTATTTTTTTATCAGCTACAAATTTGTATCCAACTTATTATCCTACTCAAATGAcatagctggctagttagcgagGTCATTTTGCAGTTTTGGCTAACGTTATCTATAAACATGAGCAATCTTGTATTCTGGAGTCAAGGTAGCTCCGAAGTGGATTGGTGTGAAGGAAATTATCTTATTTACCCTGGAATTGCAGAGTTCTACAATACGATCAGCAAcatactgttttttattttgccACCTATTTTGATGTGTCTGTTTCGACAATATGCTACACATTTcaacagtgggatatatctgatCTGGGCTTTGCTGGTTGTGGTTGGCATTGGATCCACTTACTTCCATGCCACCCTTAGCTTCCTGGGCCAGATGCTGGACGAGCTAGCCATCCTGTGGGTGCTCATGTGTGCCATCGGCATGTGGTTCCCAAAAAGATACCTGCCCAAGAGCTTCCGCAGAAACAGGATAAGGTTCAAAGTGGTCATTGGGATCCTGTCAGGAATAACCACAGGACTGGCGTTCGTCAAACCTGCCATCAACGCCATCTCTCTAATGAGCCTGGGCATCCCCTGCACCGCCTTGCTCATAACCGAGATCAAGAGgtGTGAGAACCTGCGTGTGTTTAAGCTGGGTCTGCTCACTGGGATGTGGTGGACACTGGCATTGCTCTGCTGGATCAGTGACAGGATCTTCTGTGATATGTGGTCCTCTGTCAACTTCCCCTATTTGCACTGTGCATGgCACATACTCATCTGTCTGGCTTCCTACCTTGGGTGCGTGTGCTTTGCCTACTTCGACGCAGCCTCTGAGGCCCCAGAGCAGGGCCCCGTGGTCAAGTTCTGGCCCAGTGAAAAGTGGGCCTTCATTGGGGTGCCCTACGTCACTCTTCTGTGTGTCCAGAAGAAGCACTCTGTCAAAGTGACATAACCAGTGTACTttttccatgtgtatcaacaatggtccaccgcccaaaggacatccagtcaacttgacacaactgtgggaatcattggagtcaacatggaccagcatccctgtggaacgctttcaacaccatgtagagtccatgtcccagcgaattgaggctgttctcagGGCGAAAGGGagggtgaaactcaatattagaaaggtgttcctaatgtttgtatagtcagtgtataGTAAACGTATTGCCTatatcagggtttcccaaactcagtcctgccccccccccccccccccgccccccccccacccttgttgcatgtttagtttttttgccctctgattcaaataaccaactcatcatcaagtatttgaatcagctgtgtagaactaaagcaaaaaaacaaaacatgcacccaGTGTGGGCCCCAGCACCAAGTTTGGGAGACCCTGGCCTATCttattaacgtgtgtgtgtgcgcgtgcatatATAGGTAACATAACCATTACATTTTCAGTGTTATTTTAGCCAtaattattactgttaaatgttACATTTCTTATTTCAAGGGAAGTGTGCAGTATCTATAGTGTTCTAAAGTATTTCATCTCAGTGTTGTCTGgttattgtgataaattgcagaaGAGTTTATGCAAGAATTTGTGCTGCAAAAGTATTTTGCAAGGTAGGCCATTCTGAAAAGAGACTAAAAGCAGTATTATCATGTTTAGTATGGGATATGAAGTACTCTCCCTGACAACAGCCATCATAGGCGTTATGGCAGTGGCCAAACGCATGCCAGTGCCAATGTGGTGAAAATATGTTACTTTTCAGAAAGTGCCTTTTATTTTCCTATTATAACAGATAGGTTAATATAATGTGTGTTTGGAAACAAAGATGGAAGAATTTCTCATgactttttacattttattttgtgtaATAAAACTGTTCAACATTTACTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2001208 lncRNA upstream 8214 49543651 ~ 49585172 (+) True G1747830
TU2001214 lncRNA upstream 8624 49458248 ~ 49584762 (+) True G1747833
TU2001213 lncRNA upstream 11998 49563533 ~ 49581388 (+) True G1747832
TU2001207 lncRNA upstream 93143 49475252 ~ 49500243 (+) False G1747830
TU2001226 lncRNA upstream 107463 49478939 ~ 49485923 (+) True G1747842
TU2001304 lncRNA downstream 58927 49664804 ~ 49665123 (+) True G1747905
TU2001398 lncRNA downstream 62870 49668747 ~ 49668956 (+) True G1747966
TU2001407 lncRNA downstream 69358 49675235 ~ 49675508 (+) True G1747975
TU2001409 lncRNA downstream 70174 49676051 ~ 49676367 (+) True G1747977
TU2001458 lncRNA downstream 153213 49759090 ~ 49759342 (+) True G1748021
XM_036958068.1 mRNA upstream 1179252 48382854 ~ 48414134 (+) False LOC110500610
XM_021578063.2 mRNA upstream 1179252 48387317 ~ 48414134 (+) False LOC110500610
XM_036958069.1 mRNA upstream 1179252 48387317 ~ 48414134 (+) False LOC110500610
XM_036958070.1 mRNA upstream 1179252 48387319 ~ 48414134 (+) True LOC110500610
XM_036958058.1 mRNA upstream 1635369 47368679 ~ 47958017 (+) False LOC110500605
XM_021578099.2 mRNA downstream 222 49606099 ~ 49609714 (+) False LOC110500625
XM_021578097.2 mRNA downstream 223 49606100 ~ 49609714 (+) False LOC110500625
XM_021578096.2 mRNA downstream 248 49606125 ~ 49609714 (+) False LOC110500625
XM_021578098.2 mRNA downstream 249 49606126 ~ 49609714 (+) False LOC110500625
XM_021578092.2 mRNA downstream 5374 49611251 ~ 49623432 (+) False aco1
TU2001181 other upstream 146760 49445839 ~ 49446626 (+) True G1747814
TU2000589 other upstream 615628 48977326 ~ 48977758 (+) True G1747255
TU1999753 other upstream 1229460 48325100 ~ 48363926 (+) True G1746471
TU1999487 other upstream 1498267 48094767 ~ 48095119 (+) True G1746210
TU1997842 other upstream 2425732 47163904 ~ 47167654 (+) True G1744645
TU2001255 other downstream 276 49606153 ~ 49609580 (+) False LOC110500625
TU2001256 other downstream 276 49606153 ~ 49609580 (+) True LOC110500625
TU2002232 other downstream 993033 50598910 ~ 50603277 (+) False LOC110500883
TU2002231 other downstream 993650 50599527 ~ 50603277 (+) True LOC110500883
TU2003188 other downstream 1510568 51116445 ~ 51133338 (+) True LOC110500674

Expression Profile