RNA id: TU2001256


Basic Information

Item Value
RNA id TU2001256
length 2204
RNA type TUCP
GC content 0.44
exon number 4
gene id LOC110500625
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 49606099 ~ 49609714 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGAATGAGTGCCTTTTATGTGCAGTGAGCAGACTGCATCTCAGCTGGTAGACCTGCCTGAAAACCACCTCACTACACATATTGGTGAGTTAAGTCAAAAAAATGATTATTTGTATATAGATATGTTTATAATGTgctgtatgttttgtttttaaatgctGTTTAAGTTGTTTGTCTGTTTAAGTTGACCTGTTTAATATTAATGGTCCTAGGTATCTGACAAGTTTAAGAGACGGCTCTGCGGTCTTCGTATTATCCTTGAGCGATGTAGATTGTTTTTTTTAAGAGTTGTTGACCATACAAGCATAGTTTTTTTATATGATGTTTTCGATGGCAAGATTTATAGATGTTTGTAGAACCAGGCGGATCTGCCTTGATTACCTTCAGTTGACATTAAATGCACAATAAATtaccagacactcttatccagagcgatttacaggagaaattagggttacgtgccttgctcaagggcacattgacagattttttttcacctagttggcttgggtattcaaaccagcaacttgTTGTTTACTGGCACAAGGCTCTTaattactaggctacctgccgctgagTAAATTACATGCACAGGCATTTGGTCTGGTTTTCTAACTAACACAGTGGATCATTCATAGTGTTTTTTTGACCTCCAATACCTCAGCCTGGATCTAAGGATGAAATGACTATAATAACACATGAGAACAGGCACTGCTGTGGACCTACTGTATGCTACAAATGAAGGTCATTAGGTGAACTGAATGAAAACTGAATCACCTCGGTGATGGTGAAGTACTGTATTGTATTCCTCTAGCCAGAACACGTTTGGATTCTGTTAGTGTAGTTTTTTTGACCGATGCTGTTCTTCACTCATGTCAACAATCCAAAGTTCACGATGTACCAACACGTCTCAAAGGTGACAAATTAGGGGAAATTGTTGAGGTATTCAATGATGGTCCTGAAGGGCTACTGCAGCTGCTGCTTTACATTCAATCCCGCTGATCAGGGACTAAGTACtaattgaaatcatttcaaatactttagctgtacttgattgagcttgcctgttgcaatggaaccaatagaaatctcccaaaagtgcaaaccccaaCCAGATGGCACTCCTGGCAGGCTGAAGCAAAGctgaaagtatttgaaagatttcaaatagtatatTAACCCAGGTTTGCCTGAGTAATAACGCTTTTGTCAGTCAGTTATATGACCTGTACTATTCAGAAAACATTTGGGTCCGGAATGAGCATTTTGGCTTCTTGCTTATGTTTAACTCCTAGAAAATGTTTTTTGGTAGTAAGTACTCTCAATAACTAAACCATTATGCCCTTGTTTTGATTTGAGGGTGGATTTCAGGGATTACGGCGCCATGTATCTGAATACCCTGGTAATCTGGCTAGTTGGCACCGAGGAGTGAGGTGTTCGGAGGCTGTAGCTCGGCTTCTTAGCCATGGAGACAGAGGGGCTGCCTGCTGCACCAGGCCAGTATAGCCAGCCCGGTCAGCCAGGCCCAGTGCTGGGGCTTCGGAGTCTCTCCTTTGCCTACCAGGGCTTGCTAGAGATCCCCTACGAAGTCATACTAGCCCAGCAACACACCCTGGAAGTGTTGGACCTCAGCTACAACCTGCTGGAGGAAGCCCAGCTCTCCTGGGTGAACTGGAGCAGCTCAGCACTCTGATCCTGGACTGCAACATCTATTCGTCCCACGTCAAGTTCCCCTACATGCCAAGCGTCACCACCGTGTGGATCAACAAGAACAAGATCAGCAACCTGCCCATCTTCGTGGAGGAGATCCGCCGCAAGTTTCCCAACATCAAGATCCTCAGCATGATGAACAACGAGGCAGCACCCAGCTACTTCAATGGAGGGAGTCTGCCCCAGTACATAGACTACAGGCAGTATGTGATCAGTCAGATCCCAAGCCTGACGATCCTGGATGACACTGAGGTtctggggaaagagagagcgcaGGCTAAGAAGACCTATAGGATGCAGAGGACCAGGGAAGGCAGCAAAAGGAGGAAGGAGCTCCATCGTTGAACCCTCCTTAATACTGCTACCTATATAACTGATCTGAAGACGTATCAAGATGAGCAAATCATTCATTCTCGCGATAAATGATTAGTTCAAGCAAGCTAGCACCAGTTGTAAATATATTGTCAACATGTTATGTGTTCAAATGAAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2001208 lncRNA upstream 20981 49543651 ~ 49585172 (+) True G1747830
TU2001214 lncRNA upstream 21391 49458248 ~ 49584762 (+) True G1747833
TU2001304 lncRNA downstream 55224 49664804 ~ 49665123 (+) True G1747905
TU2001398 lncRNA downstream 59167 49668747 ~ 49668956 (+) True G1747966
TU2001407 lncRNA downstream 65655 49675235 ~ 49675508 (+) True G1747975
TU2001409 lncRNA downstream 66471 49676051 ~ 49676367 (+) True G1747977
TU2001458 lncRNA downstream 149510 49759090 ~ 49759342 (+) True G1748021
XM_021578094.2 mRNA upstream 276 49593386 ~ 49605877 (+) False LOC110500624
XM_036958085.1 mRNA upstream 276 49593386 ~ 49605877 (+) True LOC110500624
XM_021578063.2 mRNA upstream 1192019 48387317 ~ 48414134 (+) False LOC110500610
XM_021578092.2 mRNA downstream 1671 49611251 ~ 49623432 (+) False aco1
XM_021578093.2 mRNA downstream 2860 49612440 ~ 49623432 (+) True aco1
XM_021578101.2 mRNA downstream 45112 49654692 ~ 49662658 (+) True LOC110500627
XM_036958088.1 mRNA downstream 71088 49680668 ~ 49772757 (+) False LOC110500628
XM_036958086.1 mRNA downstream 71095 49680675 ~ 49772757 (+) False LOC110500628
TU2001181 other upstream 159527 49445839 ~ 49446626 (+) True G1747814
TU2000589 other upstream 628395 48977326 ~ 48977758 (+) True G1747255
TU1999753 other upstream 1242227 48325100 ~ 48363926 (+) True G1746471
TU1999487 other upstream 1511034 48094767 ~ 48095119 (+) True G1746210
TU1997842 other upstream 2438499 47163904 ~ 47167654 (+) True G1744645
TU2002232 other downstream 989330 50598910 ~ 50603277 (+) False LOC110500883
TU2002231 other downstream 989947 50599527 ~ 50603277 (+) True LOC110500883
TU2003188 other downstream 1506865 51116445 ~ 51133338 (+) True LOC110500674
TU2003175 other downstream 1524509 51134089 ~ 51142008 (+) True gbrap
TU2003336 other downstream 1753106 51362686 ~ 51363380 (+) True G1749651

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU189483 True 824 lncRNA 0.44 4 NC_053125.1 1719925 ~ 1725333 (-)