RNA id: XM_021578093.2


Basic Information

Item Value
RNA id XM_021578093.2
length 4699
RNA type mRNA
GC content 0.49
exon number 21
gene id aco1
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 49611251 ~ 49623432 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGTCTGTTCAACCTTGGCAGAGAATCTTCATTTTTAGGCAATAGGCTTATGCTAATACTTCTAGCCTATTCCTGTCAAGCACGATTTGTAGGCTATTTGGTTGCATTTTCCTGAGTATAAAAAGGATGTTAGATAGGGATTGGTAGTGAATTAGTTCAAACCACAGTTTGAACAATGCTCAAGTTTTTTCCACTTGTTGAGTGATTAGCCTAATTTAATACGCAGCAGAGGATAGTAGTATTCCAGAAATATTGTGTTTTGGAACACCGTACTAGGCTAATTCACAGGTCTGTTATACCCAGCATTTAGCTGGAATCGTACTTCCCTGTCTGTCCGTGCTGAAACTTCCTTGACCTAACAGGTTCTCCCGTAAAAAGATAAAAAGCAGTAACCCCaggtgtatgtgtgagagagggagaaagtctACAGCTATGAGTAATCCTTTTGCACACATAGTTGAGGCTCTGGACCCAAACATCCCCGACCACAAGTTCTACAACCTCTCAAAGCTTGGAGACCCCAGATATGACCGCCTGCCATTCTCCATCCGTGTGCTGCTTGAGTCGGCTGTGAGGAACTGTGATGGGTTCCTGGTGAAGCGGTCAGACGTGGAGAGCATCCTGAACTGGAAGCAGACCCAGACTCAAAGCGTAGAGGTGCCATTCAGACCTGCCAGGGTCATCCTGCAGGATTTCACTGGAGTGCCTGCAGTAGTGGACTTTGCTGCGATGCGCGACGCTGTGAAGAAGCTGGGTGGAGATCCAGAGAAGATCAACCCAGTATGTCCAGCGGACCTTGTCATTGATCATTCCATCCAGGTGGACTTCAACAGGAAGTCTGACAGCCTCCAGAAAAACCAGGACTTGGAGTTtgacagaaacagagagcgatTTGAGTTCTTAAAGTGGGGCTCCAAAGCATTCCAGAACATGCGTATCATTCCCCCCGGTTCGGGGATAGTGCACCAGGTCAACCTGGAGTACCTGGCCAGGGTGGTGTTTGACCAGGACGGCTACTACTACCCTGACAGTCTGGTGGGCACCGACTCCCACACCACCATGATTGACGGCCTGGGCGTGCTGGGCTGGGGTGTGGGCGGGATCGAGGCGGAGGCCGTCATGCTGGGCCAGCCAATCAGCATGGTGCTCCCCGAAGTCATCGGCTACAGGCTACAGGGCACCCCCAACAAGTTCATCACCTCAACCGACATCGTCCTCACCGTCACTAAGCACCTGCGCCAGGTCGGCGTCGTGGGGAAGTTTGTGGAGTTCTTCGGGCCAGGTGTGGCACAGCTATCCATAGCCGATCGAGCCACCATCGCCAACATGTGCCCAGAGTACGGCGCTACTGCAGCTTTTTTCCCTGTAGACCACATCAGTCTTCAGTACCTGGAGCAGACAGggagagatgctgagaagCTGGATTACATCACCAGGTATCTGAAAGCAGTAGCCATGTTCAGAGACTACAGCAACTCCTCCCAGGACCCTGACTTCACCCAGGTGCATGAGCTGGACCTGAGCACCGTGGTTCCGTGCTGCAGTGGTCCCAAGAGGCCTCAGGACAGGGTGGCTGTGTCGGACATGAAGACTGACTTTGAGGCATGCCTGGCAGCTAAGCAAGGCTTCAAGGGTTTCCAGGTGACTCCGGAGCTTCACCACGTGAAGGTTCCATTCCAATACAATGACAAGGAGTACAGCCTCTCCCACGGCTCAGTGGTCATTGCTGCCATCACCAGCTGTACCAACACCAGCAACCCCTCTGTTATGCTGGGGGCTGGTCTCCTGGCGAAGAAGGCCATCGAGGCTGGTCTGAGCATGAAGCCCTACATCAAGACCAGCCTGTCGCCCGGCAGCGGAGTGGTCACCTACTACCTAAAGGAGAGTGGCGTCATGGACTACCTCTTCCAGCTCGGGTTTGAAGTGGTGGGTTATGGCTGCATGACATGTATAGGTAACAGTGGGCCCCTCCCAGAGCCTGTGGTGGAGGCCATTACTCAGGGAGATCTAGTAGCCGCTGGGATCCTATCAGGTAACAGGAACTTTGAGGGGCGTGTCCACCCCAACACACGAGCCAATTACCTAGCCTCTCCCCCGCTGGTCATTGCCTACGCTATCGCCGGAACCGTGAGGATTGACTTTGATACAGAGCCCATTGCTCTGAACAACAAAGGGAAGGAGGTTTTCCTCAGGGACATCTGGCCCACACGGGAGGAGATCCAGGCTGTGGAGAGACAGTTTGTCATTCCTGCTATGTTCAAAGAGGTTTATGAGAAGATTGAGAAAGTGAATGAACGCTGGAACGCCCTCAACGCCCCCTCAGACAAGCTGTACACCTGGGACCCCAAGTCCACCTACATCAAGTCCCCACCCTTCTTCGATGGACTGACCAAGGAACTACAGACCCCCAAGTCCATAACTAACGCCTACGTGCTGCTGAACTTCGGTGACTCTGTGACCACAGACCACATCTCTCCTGCTGGGAACATCGCCCGAACCAGTCCTGCAGCACGGTACCTGACCAGCAGAGGTTTAAACCCACGTGACTTCAACTCGTACGGATCACGGCGTGGTAACGATGCTGTGATGGCCCGGGGCACGTTCGCCAACATCCGTCTCTTCAACAAGTTCCTGAACAAGCAGGCTCCGCGCACCCTGCACTTACCTTCTGATGAAACGCTGGATGTGTTTGATGCTGCTGAGCGCTACCAGCAGGCTGGCCTCCCCCTCATGATCCTGGCTGGGAAGGAGTATGGATCGGGCAGCTCGAGAGACTGGGCCGCTAAAGGTCCCTtcctcctgGGAATCAAGGCGGTGCTGGCAGAGAGCTATGAGCGAATCCACCGCAGTAACCTGGTGGGCATGGGGGTGATTCCTCTGGAGTACCTGGCTGGGGACACAGCAGACAGCCTGGGGCTGACAGGACGTGAGCGCTACACCGTGGTCATCCCTGAGCCACTCACACCCAGGATGATTGTTGACATTAAGCTCGACACGGGCAAAACATTCCAGGTGAGGATGAGGTTTGACACGGACGTGGAGCTGACGTACTTCCACAACGGAGGCATCCTGAACTACATGATCCGCAAGATGTCTGAGAACTAGAGAGCACGCCGTTGGGACCAAGTCACGCTGAACACGAAAATCTTCTGTGTAGATGGCGATACAGAACGTGTTgagtctccctctctgtttctgttcgaTTTTAACATTTGGTTTACATAATCTTATGTGTTTTTAGTGCATTAATTGGTTCCATACTTGATCCGTTGCAGGTCGGAATGATGGAATGAGTCAAAGTACCCCACAACACATTTAACACTGGTATGATgtacacctgggttcaaatagtctTTGCTTTTTTAATCAAGCCCAGCTAAAGTGtttgaaaacaaatattttaacACAGGTCTCGTATGATGTAACCACCCTACCTCTTTGTTGCCAAACCAGTGGTTCACCCACCCTCATCCCTCCCACCGTccatgctaacattagctagccatGCACACAAACCTAGTCGGCTGTCATGTCCAGTTGTTACCATCGTTGGTTCAAAGCTGCCAGTCATGGTCATCTGTTCCGACCAGGGTTGTATTTGTTGATTTCATGTCTTATTATAAACTGCTGCTGTGGTGAAGCAGACATAGGCTGCTTCtgaaatggagccctattcccttcatagttcaCTACTTGTGACCAAAAtgtgtgcactgtatagggaataaggtgttaaACCCAGACACTGTAATAGGTTGGCTTCGACTCCTGACAACGAGGGTGTTGTCTTTGTATTATGAAAAAGAGACCAGCATAGTTTATTAGAATGCAATTAGAGTACCTAAGTTGAATTGCCTTAAATGGTGAAGTTGACATTAACCCTCGCCTTTTATGAGAGGAACAGTATATTGTGCGTATGCCTCGTCTCTTAAATCCAGCCTCTGTTTTTACTAGATCACAAATTTcagtcttgtttgtttcacaaatcCACTTTTCTTTCTTAACCTGTTGATGTTGGCAATAGGACTTATGATTTTGTCACAGTGGGTGGTTGCAACATTTTAGTACGTTTCCAGAAATCTCTGTTAGAATCCACCAACCAGAATTGTGCAACCCTATTGGTGAGTGTGGCTGGACTTAATTCCCAGTTGCCGGTGTGACAGGGAGGCTAGTAAATCAAATTAATATAATCATGAATTCCAAACTGCATGAAGTTTCTTAGCTGAAGCGAGAATTCATATTTTCTCTAAGCACTTGGGGTTTAATGGACCAAATAGTTTCTATCAATAAGAATGAAGTCCTACTTTGAGATTCTTTTCAGAAGGTACTTGTTTGTGGTATggataaaatgtatatttttcccCCCAAGGTTAGCAGAAGGAGTCTGCTACAAGGCCACACCGGGGCTAGTGGTAGTCTTCGTCCTTCCTGTTTTTCTTTCCGCAAATAACTGGACATATCCACCATATTGCAGAGTAAGACTACATTTGTCAAATTTAATACACATTCATTTGACTTTAGACAGGAATGTTTTCGAAAAAAAGGAGAGCTGCACATTAGAACCTCAGATGCAAGAAGTGAATAAccacgtttcgacagacaagctgtcttcatcaaagTATattctccgctagccagcacctcgcctaaacaggtgtgcgGTTCTTTTGCCTCTAATAAACTTTAACTTCTACATAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG:

id description
K01681 ACO, acnA; aconitate hydratase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2001208 lncRNA upstream 27268 49543651 ~ 49585172 (+) True G1747830
TU2001214 lncRNA upstream 27678 49458248 ~ 49584762 (+) True G1747833
TU2001304 lncRNA downstream 41372 49664804 ~ 49665123 (+) True G1747905
TU2001398 lncRNA downstream 45315 49668747 ~ 49668956 (+) True G1747966
TU2001407 lncRNA downstream 51803 49675235 ~ 49675508 (+) True G1747975
TU2001409 lncRNA downstream 52619 49676051 ~ 49676367 (+) True G1747977
TU2001458 lncRNA downstream 135658 49759090 ~ 49759342 (+) True G1748021
XM_021578099.2 mRNA upstream 2726 49606099 ~ 49609714 (+) False LOC110500625
XM_021578097.2 mRNA upstream 2726 49606100 ~ 49609714 (+) False LOC110500625
XM_021578096.2 mRNA upstream 2726 49606125 ~ 49609714 (+) False LOC110500625
XM_021578098.2 mRNA upstream 2726 49606126 ~ 49609714 (+) False LOC110500625
XM_036958085.1 mRNA upstream 6563 49593386 ~ 49605877 (+) True LOC110500624
XM_021578101.2 mRNA downstream 31260 49654692 ~ 49662658 (+) True LOC110500627
XM_036958088.1 mRNA downstream 57236 49680668 ~ 49772757 (+) False LOC110500628
XM_036958086.1 mRNA downstream 57243 49680675 ~ 49772757 (+) False LOC110500628
XM_036958089.1 mRNA downstream 57245 49680677 ~ 49772757 (+) False LOC110500628
XM_036958087.1 mRNA downstream 57248 49680680 ~ 49772757 (+) False LOC110500628
TU2001255 other upstream 2860 49606153 ~ 49609580 (+) False LOC110500625
TU2001256 other upstream 2860 49606153 ~ 49609580 (+) True LOC110500625
TU2001181 other upstream 165814 49445839 ~ 49446626 (+) True G1747814
TU2000589 other upstream 634682 48977326 ~ 48977758 (+) True G1747255
TU1999753 other upstream 1248514 48325100 ~ 48363926 (+) True G1746471
TU2002232 other downstream 975478 50598910 ~ 50603277 (+) False LOC110500883
TU2002231 other downstream 976095 50599527 ~ 50603277 (+) True LOC110500883
TU2003188 other downstream 1493013 51116445 ~ 51133338 (+) True LOC110500674
TU2003175 other downstream 1510657 51134089 ~ 51142008 (+) True gbrap
TU2003336 other downstream 1739254 51362686 ~ 51363380 (+) True G1749651

Expression Profile