RNA id: XM_036958090.1


Basic Information

Item Value
RNA id XM_036958090.1
length 7465
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC110500628
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 49680668 ~ 49772757 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGGAGCTCTCTTTGGCTGCGCAGAGCGGTACAGAGAAGGCAGTCAGATAGGGGAAAGTGAGGCGTAGACCTGCCCAGTTCCGAAAACTCAGCCTCTTCTGGATCGCATTCAACAACAACTGAACAACCCAAAAGCTATCCAAAAGTAAGACGTGAAGAGGAAGgaagatttttttggggggcgaCTTGATTTTACGCGCATTTCTGCCAAGAATTCTCTtacgttttttttgttgcaagCATTATCAAGAAAAAAAGCCTGAAAAGCACAAAGTTGAACGTGAGAAATGTGAAGGCACCGGCTTGTGTTTCACCCAGGTTCCAGGATCCCCCTTTAAATCCATGCAATACAGTGCAATGGTACGTGAACGTAGATTATTATTGCAATAACGTGTAATTTTACAACTGTTACAACATCGCCTTTTCCTACTGTTGACTTGCTCTTCACTGCAACCCGGTCTGGTTGAGCAGGAATAGAATTATGTCAATGACAACTGGACAAGACCCGTTAACAGATATGCAAATGCTTTTCATTGGTCGGAGGAGCGCCCAAAGAAAATGTATTGGCACACATACTGCGTTAACCTCCCTTGccccctttgttggcaatgaacTTCATTCGTAATGTATGGAGCAATTCTATAGGAGATTACAGAGGCAAGGCGTTAACAACAATGTCTGGTTTTCTGCGAACGAAAAAGTGCACATTTGTAGGGATAATTGTTCTAATTTACACCATATTTATGTCATTGCTATATAGTCCAATAATGAGCCGTAACTTCCGTGAAAAGGAAAAGGTTAACAACACGATGTTCCTCCGCGTGCAATGAAAAACAGGTTACGGGCCGGGCCATTGGCGAAGTAGTCGAGAATACTTTTACACAAAATCGCATTTTACTCTCTCAGGATTAAAAATGAAACATTATTTACTATTTGTTTGACACCAAATTGTAGTTTAGGCCAGTACATGTATATTACTGTGGAGTGAGTTGAAGCGAAGAGTCGTTGACAGGCTGCTCCTGTCCTCTGCGCTCTTCCAGTAGTTCCTAAATGGTGGATCTGTCCGGACCTCATAGGTCGTAGCTATGAGTTGTGGTGTTGGaaaatgttgttgtgatgttggaaaATGTTGTTGTCTCGTTTATGTGGTCGGTCATGCGGAAATTGTAATGACCTCAGGTGTGTCAGAGTTTTGGAACCACTCCACTGTTTATCCAAATTACATCAGAACCATGCGCCACCGTGACATACCACGGTTTGAACAGTTTCCTGTAACTGGCATAGTTTAGAAAGGCCATATGCTATAAATTTGCCCACATTTAAAGTGGCAATAtacagttgctacatccatttttttggACGTAtacattaatgatatgtacccattgtttcTTGAAGAATATACTTTATAAATGCCTCACGAGCTCAGTTCAACTGTCGTGCCTCATCAGAACCCAGAACCCTAAATAtgtttttactccaatgtttgtaaataaTGTCCATGTAAACAAGCATTATAtaacctcaaaacatggttaaaactatcatgttgatatcatggatggccagtccttgtatccatagctcAGTCtaggaatttgagagtggttacatttcttcagGTCTTTCACTGAGCTTTTTGTAGAAACGGGTGGGGAGCCAGAGGTATCAGGCAATAAGAATTAGGTTACTTGAAATTCTAAACTGTTTTCAGTTTTATTAAAGGTGTGCCATCAAGGCAAATCAAGTTACTTTTGTTGTAATTTCAACATGTATTGTAAGTAGAGGGGGCCATTGTATATACTGTGGATTGAGTGAGAAATGCATTTTAGAAGTTTATTATACACTATATTGGGCATTTCTATTGGATTTTCTGTTACATATGCCTGTATACTGTAAATGAAAATGATCGACCGGTTAAAGCTGCATGTAAAACAAGAGTTCGAATAATGTCTCGAGTCCTTACTGTATTTGTGAGGGGAATTTTCCATTGCGATTCTTTTTGAACGGGGCGCTGGTCCAAAGTCTTCCGCTCATAAAATCATAACTcatacagcaagagagagagagggtggggggtgtCGTTTTATGCTGTGTTTTCTGAGGGAGACGAAAAGGTGGGCTAGTGGAAATGGAATGcgtttgttggaggaggaggagtatagACTATGACTGTGTAATTAAGTGAGAGAAAACATATTGGGGACGGATTTGTTAGTATCGTGCAGACTGAGGGTGTACAGGTCGATATTATAGGCAATCAAGTTTGAACAAGAAGAGTGTGGAATCTGAAATTCAGCGCTTTCTATACTTTTCACAATACTTTCATGAATTAACTTCTCACATTATAAAGCGCACTGTTCCAGAAAAGCGGGTTTTCTTTTTAACTTCATTCACCGGCTCGGATTGAGATAACCATATAGGGATTCAATGTGCTGCTTTGGAAAATAATAGCCTGTCTGCCATATCGTCTCCATTATCGTCTCCATTTAAACGGAGAACAGAGGATTGTTTGGACCTCCACAATCTAACTGATGTTATTGTATAACACCTTTGCGCGGATAACTTCTCCACAATCTTGCATGGTGCTTTACGGGCAAGGAGGAATGGCGCGATAAAGTGGTAGCCTATACCTGGCATTCAGAAGAATCAATCGAAGTACCTATTTTGTGTACACTGCTGGCTCATGATGTACTCTCCGATTTGTCTTACTCAGGATGAATTTCATCCCTTCATCGAGGCACTTCTCCCTCATGTCCGTGCCATCGCCTACACGTGGTTCAACCTCCAGGCGAGGAAACGCAAGTATTTCAAGAAGCATGAGAAGCGGATGTCCAAGGACGAGGAGCGTGCGGTCAAGGACGAACTGCTCAGCGAGAAGCCCGAGATCAAGCAGAAGTGGGCCTCCAGGCTCCTCGCCAAGCTCCGCAAGGACATCCGCCAGGAGTACCGTGAGGACTTTGTGCTCAGCGTGACGGGCAAGAAGCACCCGTGCTGCGTCCTCTCCAACCCTGATCAGAAGGGCAAGATCCGCCGGATCGACTGTTTGCGGCAGGCCGACAAGGTGTGGCGCCTAGACCTGGTCATGGTCATCCTGTTCAAAGGCATCCCGTTGGAAAGTACGGACGGAGAACGCCTCGTCAAGTCGCCGCATTGCACCAACCCAGCACTTTGCGTCCAGCCGCATCACATTACAGTGTCGGTCAAGGAGCTCGACTTGTTTCTAGCATACTATGTCCAGGACCAAGACGCACAGCAGTCAGGAAGTCCCAGTAACAATGAGCCAGGCAACAACCCTCCAGTTTACTTGGAAGACAGCTTCATCAAATCAGGAGTCTTCAGTGTTTCGGAGCTGGTGCGGGTGTCCAGAAcGCCCATCACCCAGGGGGCAGGGGTGAACTTCTCCATGGCCGACATGCCTAGTCAGCCGTACTACCATGACCTAAACTCCAGTGTGGGCCTCCatcgctccctctcctccccgcctGGCAGTAAACGGCCCAAGACCCTCAACATAGAGGAGAGTATGGAGACCAGTCCCACTGGCCCTGACTTCTATTCCTCACCTAGCTCCCCAGCTAGTGGCAGCAGGACCTGGCacgagagagaagACCTGTCATCTCCCACCATGAAGAAGCCCGAGAAGCCTCTCTTCAGCCCCACCTCCCCGCAGGATTCCTCACCCAGACTGAGCACTTTCCCCCAGCACCACCACCCCGGACTCACAGGCATCGGACACAGTGTTATATCAACGAGGAGCCCTCCCCCCCATTCCCCCCTGCAGTTCTCTGCCTCTGCCATCCTCCCCCCCGCCCCGTCACCCTACTTCTCCCACCCCACCATCCGCTACCCACCCCATCTCAACCCCCCTGACTCCCTGAAGAGCTACGTGTCCAGCTACGACCCGTCCAGCCCACAGACCAGCCAGccgaacAGCAGTAGCCAGGTGGGGAAGGTTCAGGGCCACTTCACCCCGGTCCTtgccccctctccacaccacggCACAGTgcgacctgtctccctctccatgcCCGACACCAAGCCCATCACATCAGAAGGTGAGTACAATGGCTACTCAGCCCCGGGCACCCCCACAGCCAATCGTTTTGTAGGACTGAGCTCTAGAGATCCAGCCTTCCTTCACCAACAACAGTCCTGGTACCTGGGCGAGCTTAGTTCCATTCCAAGTCACGAACGGGACTCCGATTCTGCCGACAAATGTCCACCAGAACTACAGCATAAACATCATTGGTGaaccccccctcctccacacaGAGGCAGAGAACTGAAGACCGCTCAAGGGGCAAGAAGTGTCGGCTACGGGGGAACTAACCAGCAAGCAGCACTTAAAACAATGGTgcttaccccctctctccctccccccctccctcccttcctccctcccacaaACCCCTCCTCCTTCGGGACATTGGCCAAGAAGACTCGAGTAGGTTTGGAGCAAAACTGATCCGGTCCACTCTAGCTAACCCTTCGCCATGCCAGTCAGTCATTGTGTGAAAAGAGCCTTTCTATTCAAAATACTGTGATGTATCCTGTACAAAAAAACTTAAGATGCCTTAATGTTTTGCATGACAACTCTTAGTCTAATAGTGGTGTTCTTCTTCATTTTGATGTTGGGAGTTTCTAACCTTGGTTACGAACAGGGGAAGTGGTGGTCTGAAACACACAAAGACTGGCTGGTAGTAGACGTACCCGACTGTAAGTTATTCAACTTTGACCTTTACCCCTTCTATATCAAACTATTCACTGTGTAACCATAGGAACAAATTGTGAATTCAGAGTGTTTTTTCCCTTAGATTTCAGTTTActgtgatatatatttttttttactcattatCCTGTTGATTCTGTACTGCTATCTACTTAAAAGTTAGTTATACTCTTAAGAGTACTCCTAACTCTTactatggtaaaaaaaaaaagaagaagactAAACACTATTTTTAGGTTAGAGATTTGACCCCTTTTTTGAAAGAATTCGTATCTCCTCTaggaaaagtatttttttttaagatttaaaaaaaaaaatcttgaaaACTCGAAAGAGGCAAGTGCAATTGAATTTTTGAAGGGAAGCTATCAGTCTGTCAGCCCGAAGACTCTAAAGGAAAGGGGATAAATGTAGTTTTTTTGGTTTAAATACGTAAACgtgaaatgtttaaaaaaacatttgagttGATTTCAGTCGCATTTCTTTGTGTCTCGATATGGAAAGAAAAAAAATACTAAGCCTGAAATGCAGAGATGTGTTTGAAGGTGCGCATTAAGCTACCTATGCACAACTGAATATGAACAAGCCAGCACTTCTATTGAGCCCTACTCAGTCTCATGGGGAGCTTTTTATTTATTGTGGAAAAAATAACAAACAGCAagttaaaaaaaatgaaacacaCATAGTGTATAAAATGCCATTCGAAATCAATAACATATTCATTTGGCCATTAGCTTATGAAGCTTGTGTTTACAATATGACTTGACGGAAAAAAAAAACGAATGCAGGCTGTTAAAGTCATTCACTAAAAATGTATGTGTACGTCTCAAAATCTACACTTTTATGTGCAACCTCGAACCTCGAACCTGCAAAGTTGCAGTGGGTTGCACATTTTGCCACTTGAACACTAAAAATCCCAGATACAATGGTGGCATTCCCTGAAATCTAGAATTGTGCAAGGCAGGTTTATTGACTTGACCTCTCTCCAAGTCCAGATATGACAAATCTCTCCAATACTCTTCATTTGCACGATGACATATAGTCCACATTACGTGCCTTGCCTTTGAATATAAAGATATCACTACACTTGTTTTTTTGCGGCATTTATTACCATTATAGAAAAGAAACTAAACAATTTAtgataatactttttttttgtacTCTGAACGAAAATTGTGACATTGTTGATTTTTGACTTTGATTTACTACTTTCTCTCACAGTTACGGTGCATCTGGGATATCAAGTATAGTTGCTGTTCTAAAGTCTATAATCACCAGCATTATTTTTCAGTGTTTTCGGTGGTTTTCGAATAACctttcatttttgttttattgttttgtttttccgTTTTTCCATCTTCCAGTTACTATTGAGGAGAGAAGAATTCAGATGTATGAAAATTATGCAATACCAAGTTTTGCCTATGTAGGTAGTGCTTATAGATACGCCAATTATTAGAGGCTAGTTTGGAGGTAGACAATATTGTAATGCATTTATTTTGTTGATatcgttgttgttgttttcctttTTTAATTGACCAAAGTAGGGACTGCTTTCTATGCAGTGAATGACAAGGTCTTATTGTCGTGTATtgacagatggagagacatgtttcaatttgtttttatttcttgggggagggagggggccaTTTTTCTAAGCTTACTGTTCGCCTGTAAAGAATGCACCCGTTGGTCTCGTATGGCTGCGAAGTCACTGATCTGTCTACTGTGACAAACTTGACTCTTTGCATTCAACTTCCCACCTGGGGTGCTAGCATGTGACATTGACTAAGCTCATTTTCACAGGAGAGACGGCTTGACTTGTGGGACcatcacaaaaaaatgtaaaaattcaGGAGAGGAACACGCTAACCTTAATCAGACCCACAATTGCAAACTGAAATCATACTGCTATTGTAAGAAAAAAAATAATAGCAGGAAGCATTAACCCTTAAACATAACACGGTGCCATTCTATTATCAGTCACTATATGCAATTCTCAAGTAGATGCCttaaaaatacagtatatataaagtGACCTGTTACACATGTGGTACAATCAACACACCGACAAATCCATGTGAAACCGGTCAAATCATTCTAAAGAAAGTATTAATCAACATATATGCACTATATCTGTATACACCCCGGGGATATCTCTACCCGTTCTCGCTATAGGGAGCCTTGATTTTATCATGTAATAAGCTATGGACTACAGAGGAAGGACCTCTGCTATTTTCATTGTACTGTGTAGTGCCCGGAGAAGAACAACAATAGAGAACTTGCCTACAGTAGCACATAGGTTATCGTCTTCCCCAAGTGTGTTACGTCAAAtctataacaaacaaaaaaatatattacatATGTGAACAAAAACAACATCTCAGGCGTTACGGGGCATTACAAATTCTAATCACAACTCTCCCACTTTGTAATACAGAAAACGACTTTTATAACTCAAATAAACACTATCCACAACGATGTTACCTGTTGCACTCTATCCCAGCAATTGTGAACATTCTTACCTGCTTAATTCGAAGaaaggtactgtactgtatacgcAACACTCTTTGAGAGGCCAGAAAGTGTATAAAACCTCCTAAACTCAAGTCAAGcttattctctcctccttcaccaaGAAACTTATTCTGAATTTGGGAatgaaaaaaactaaacaaaaaccACCCCATTCTATGTGCACTGTTCTGCTTTTTTTGtgtgaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2001409 lncRNA upstream 4313 49676051 ~ 49676367 (+) True G1747977
TU2001407 lncRNA upstream 5172 49675235 ~ 49675508 (+) True G1747975
TU2001398 lncRNA upstream 11724 49668747 ~ 49668956 (+) True G1747966
TU2001304 lncRNA upstream 15557 49664804 ~ 49665123 (+) True G1747905
TU2001213 lncRNA upstream 99292 49563533 ~ 49581388 (+) True G1747832
TU2001404 lncRNA downstream 736 49773493 ~ 49776111 (+) True G1747972
TU2001584 lncRNA downstream 11809 49784566 ~ 49785100 (+) True G1748110
TU2001588 lncRNA downstream 15134 49787891 ~ 49788146 (+) True G1748114
TU2001592 lncRNA downstream 16905 49789662 ~ 49789934 (+) True G1748118
TU2001595 lncRNA downstream 18922 49791679 ~ 49791918 (+) True G1748121
XM_021578101.2 mRNA upstream 18022 49654692 ~ 49662658 (+) True LOC110500627
XM_021578092.2 mRNA upstream 57248 49611251 ~ 49623432 (+) False aco1
XM_021578093.2 mRNA upstream 57248 49612440 ~ 49623432 (+) True aco1
XM_021578096.2 mRNA upstream 70966 49606125 ~ 49609714 (+) False LOC110500625
XM_021578104.2 mRNA downstream 117830 49890587 ~ 50027397 (+) False LOC110500629
XM_021578107.2 mRNA downstream 117830 49890587 ~ 50027397 (+) False LOC110500629
XM_021578109.2 mRNA downstream 117830 49890587 ~ 50027397 (+) False LOC110500629
XM_021578110.2 mRNA downstream 117830 49890587 ~ 50027397 (+) False LOC110500629
XM_036958092.1 mRNA downstream 117830 49890587 ~ 50027397 (+) False LOC110500629
TU2001255 other upstream 71100 49606153 ~ 49609580 (+) False LOC110500625
TU2001256 other upstream 71100 49606153 ~ 49609580 (+) True LOC110500625
TU2001181 other upstream 234054 49445839 ~ 49446626 (+) True G1747814
TU2000589 other upstream 702922 48977326 ~ 48977758 (+) True G1747255
TU1999753 other upstream 1316754 48325100 ~ 48363926 (+) True G1746471
TU2002232 other downstream 826153 50598910 ~ 50603277 (+) False LOC110500883
TU2002231 other downstream 826770 50599527 ~ 50603277 (+) True LOC110500883
TU2003188 other downstream 1343688 51116445 ~ 51133338 (+) True LOC110500674
TU2003175 other downstream 1361332 51134089 ~ 51142008 (+) True gbrap
TU2003336 other downstream 1589929 51362686 ~ 51363380 (+) True G1749651

Expression Profile