RNA id: XM_021578109.2


Basic Information

Item Value
RNA id XM_021578109.2
length 3654
RNA type mRNA
GC content 0.44
exon number 14
gene id LOC110500629
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 49890587 ~ 50027397 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGCGCGCGCACAGCGTTGGGAGAAAGAACTTGATACAGAAATCACACGGACCTACAGTTTAGGGGTGGTGAAATTTGTAACCTTGTTGCAAGTATCTTTCGCGAGTGATAGGAGCAAGTGAGATCACCGAGATCTCCCATTTGGATAGAGTTGAGGTGTTGGGCAAGGACAGCGTTGGCTCTTTTTCAGGCACAGTTCAAATACATTTGAATATATAACGTTAACACCCTGGAAATGTCCGAAAACAAGCCGAATGATGATCCGAAGTTATCTACGACGGACAGGGTAGTAAAATCTGTCCCGTTCCCGCCAAGTCACCGGCTCACAGCCAAGgaggtgtttgacagtgatgggaAGCCCAAAGTGGACGTGCTCAAAGGCCACCTGACCAAGGAGGGCCGCGTGGAGGAGAGCGTAGCCCTCAGACTCATCGGAGAGGGAGCAGCCATCTTGAGGGCTGAGAAGAACCTGCTGGACATAGAGGCACCCGTGACAGTTTGCGGAGACATCCATGGCCAGTTCTTTGACCTGATGAAGCTGTTTGAAGTAGGAGGGTCACCGGCTAGCACACGCTACCTTTTCTTGGGCGACTACGTCGACAGAGGATATTTCAGTATTGAATGTGTGCTGTACTTGTGGGCCTTAAAGATCCTATACCCCAAAACACTATTTTTGCTCCGTGGGAACCACGAATGTAGACATTTAACAGAGTATTTCACATTTAAGCAGGAATGTAGAATTAAGTATTCGGAGCGGGTGTACGATGAGTGTATGGATGCCTTCGACTGCCTTCCCCTGGCTGCCCTTATGAACCAGCAGTTCCTGTGTGTACACGGAGGACTTTCCCCAGAAATCTCAAACCTTGACGACATCAGGAAATTAGACAGATTCAAAGAGCCCCCTGCGTATGGGCCCATGTGTGACCTGTTGTGGTCAGACCCCCTGGAGGACTTTGGGAACGAGAAGAGCCAAGAACACTTCACACACAACACAGTGAGAGGCTGCTCCTACTTCTACAGCTACCCCGCTGTCTGCGACTTTCTACAACACAATAACTTGTTATCTGTCATTCGAGCCCATGAAGCACAGGACGCCGGGTACCGCATGTACAGGAAGAGCCAGACGACAGGGTTTCCTTCTCTCATCACCATCTTCTCAGCACCCAACTACCTAGACGTCTACAATAACAAAGCTGCAGTACTGAAGTATGAGAACAACGTGATGAACATCAGGCAGTTCAACTGCTCACCTCACCCCTACTGGCTGCCCAACTTCATGGATGTCTTCACCTGGTCCCTCCCCTTTGTCGGGGAGAAAGtcactgAGATGCTGGTTAACGTGTTAAGCATCTGCTCCAATGATGAGCTGACGACAGACGAGGAGATCGATGGACACCTAATATATGTCCCCAAGAAAGGTGCCACAGCCTCTGCACGCAAGGAGGTCATCAGGAACAAGATCCGTGCCATTGGCAAGATGGCGAGGGTATTCTCTGTCCTAAGGGAGGAGAGTGAAAGTGTGTTGACACTGAAGGGGCTGACCCCCACCGGCATGCTGCCCAGTGGAGTGCTGTCCGGGGGCAAGGAGAAGCTCCAGAATGccATCAAGGGCTTCTCGCCACAGCACAAAATCACCAGCTTTGAGGAGGCCAAGGGCCTGGACCGCATCAACGAGCGGATGCCCCCGAGGCGGGACGGCGTCCCCTCCGACGCCAGCCTCAACTCCCTTAACAAGGCTCTGTCCTCGGAGACCAATGGCACGGACGCCAAGGACAGCAGCAACATCCAGTGAAGGGGCACACTCCACCGCAGCGGGTGGTGGTGGCAGCCTGTGGCGACCAGGGTGGGGTGTTATACCACCATCCTCCTCGTCGCAGTCTGCCACAGGGCGgaatagaggagagagcagggtggaGGAGAAAAGGGAGGGACGAGATCAGGAATGCGCTTACAGGAAGTGGTGCTCACAGGAAGTGGCGCTTACAGTACAACAACCGCAGGAGAGACTGTAGTCTTTGGgtatgcctttaaaaaaaataacttgtaGAAACGACAAAGTTTTTCGCATTGTTCACTCTTTTGGGCCCTTGGCCTCCTCGAAGCTGGTGATGACGTGCTTGATTCTGTACTTCAGtacgagagagacagactgagagaccaAGAGAAAGAGATCCTAAAGGAGATGTTTTATGAAAGCCCCTCACTCATTttactgcagggctctccaaccctgttcctggagaattACCCTCCTCTAGGTTTTCACTACAACCCCAGTTGTATCTCACCTGATTCAGctcatcaaccagctaattattagaatcaggtgcgctagattagggtttgAGTAAAAATCaacaggactgtagctctccaggaacagggttggagagccctgctctacTGGATATGAAAATGTTGTGTAACTTCTTACTAACTATTGTACGTTTACAAAATACAGCACTAAAAAGGACAgaacattaaaaaaatgtttttaacataaggGTGTACAAACTAAGTAAAGAATATTTATTGATAACTTTTTTTGCTACTCTTATAAAATAGCTCTCAGATAAATTAGGCAGTCTTAAAAATAATGTTGCAACCTTGTTGAAATGCCAAACATTTTTAAGTTTTATGGTTTTGTACAGATTATGCTTACCCCAGGTTCATTTGGTGTGTGCTTTTGACCCGGATTTCTGTATAATGGCTAATTATTACCTATTTTTGGGGAAATTTCACAACTGGAATTTACATTTatctataatttgcaaatataaaaaaaatgtttttggggatagAGTTTTTATTGTGTCTTGCTGGAATTCtgtgaatgttaatttctcttttTAAAGTATTGCGAACAAAGTAAGCGTAAAGAACCGatattgtgtaaaaaaaaaagacaaactgAAAGTGTCTGCCTATGCATGTTTTATAAACTCAAACAAAGGAAATTGATAAATGAATTGAATACCTTGGCTGCCGGGGCCTGTTTTGAAATTTAGTGCGTTTAGTGGACATATACTGGCATTCATTAAATGACATCATGATAATGCTTTTTCCCTCAACTTCTTTTAAAATTCATGCATTTGATTATCTGACATGGAGGAGGGATCATGTTTTTAACATGCGCTTGTAAGTGCACACAGTCAAATTTAGTATGTTTGACCATTCTTGTGAGGTTTGTGGTTACATGTGGAACTCAAAATGCATGATAGCTGTTAATGTCATATAACGGTTAAGACAGTCGTTCTGTTTTGTACACGTGCCACAGAAAGTGTCATTTGATTATTaggattattgttattatttggaACTCTGCTTTGTATATCAATAAAACAAAAAACTCCatgacctttaaaaaaaaaatatatatatatatatatatatatgcccaAGTATTTCACTACATGACATGAAGCTTTGCTTTTGTAATTTAACTTTGAAACAGTTGGCAGATGAAGCATGCACACGCAACTATGAAAAAGTATTTTATATTACTGTTCaataaaaaatgtgcatgaattTCAACTTAACGAAACAGTTTTTTGGTGTGTGATATAGCCAGAATTTCCTCTTCTCAGATTTCAAGTCTGCGAACTGAAAATCAATGTAAAcatattaaataaaaatgtattgcatTCTAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2001714 lncRNA upstream 8953 49881346 ~ 49881634 (+) True G1748237
TU2001713 lncRNA upstream 9460 49880903 ~ 49881127 (+) True G1748236
TU2001710 lncRNA upstream 10500 49879804 ~ 49880087 (+) True G1748233
TU2001709 lncRNA upstream 10908 49879319 ~ 49879679 (+) True G1748232
TU2001707 lncRNA upstream 11346 49878977 ~ 49879241 (+) True G1748230
TU2001955 lncRNA downstream 154332 50181729 ~ 50181990 (+) True G1748450
TU2001967 lncRNA downstream 171949 50199346 ~ 50199546 (+) True G1748462
TU2001986 lncRNA downstream 201914 50229311 ~ 50229775 (+) True G1748480
TU2001992 lncRNA downstream 217183 50244580 ~ 50247205 (+) True G1748484
TU2001995 lncRNA downstream 220059 50247456 ~ 50252566 (+) True G1748486
XM_036958086.1 mRNA upstream 117830 49680675 ~ 49772757 (+) False LOC110500628
XM_021578112.2 mRNA downstream 8157 50035554 ~ 50043842 (+) False LOC110500631
XM_021578111.2 mRNA downstream 8163 50035560 ~ 50043842 (+) True LOC110500631
XM_036958096.1 mRNA downstream 26491 50053888 ~ 50056399 (+) True LOC110500632
XM_021578114.2 mRNA downstream 54157 50081554 ~ 50083324 (+) True LOC110500633
XM_021578116.2 mRNA downstream 189754 50217151 ~ 50224340 (+) True LOC110500635
TU2001255 other upstream 281007 49606153 ~ 49609580 (+) False LOC110500625
TU2001256 other upstream 281007 49606153 ~ 49609580 (+) True LOC110500625
TU2001181 other upstream 443961 49445839 ~ 49446626 (+) True G1747814
TU2000589 other upstream 912829 48977326 ~ 48977758 (+) True G1747255
TU1999753 other upstream 1526661 48325100 ~ 48363926 (+) True G1746471
TU2002232 other downstream 571513 50598910 ~ 50603277 (+) False LOC110500883
TU2002231 other downstream 572130 50599527 ~ 50603277 (+) True LOC110500883
TU2003188 other downstream 1089048 51116445 ~ 51133338 (+) True LOC110500674
TU2003175 other downstream 1106692 51134089 ~ 51142008 (+) True gbrap
TU2003336 other downstream 1335289 51362686 ~ 51363380 (+) True G1749651

Expression Profile