RNA id: XM_036958105.1


Basic Information

Item Value
RNA id XM_036958105.1
length 3921
RNA type mRNA
GC content 0.50
exon number 16
gene id LOC110500641
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50297060 ~ 50355717 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAAGAGCCAATCAACCGCCAGCAATAGGCTGCGATTCACTTGCGTGGAATctgtagctgctgcatgtgcaagCGAGCGAGTAGTAGGAAGTGCGTGTCGAGTAGAGTTGAAGCAAACTCTGGTTGAAGTAGCGAACATTGGCGTCGATGTGGATCAATATTACTAGCGGATAAATTACTCAACCATACCATAGTCGTGAGGTGGGGTTGTACTATAGGCTACACTTCAAGCTTTCCCGGCGGCatctgggagggagagagtgctGTGGCTTACTGGTTTTGCCGGGGACGAAACGGCGTGGGTTAGCTAAGCAATTTGACAGCCTCCTGGGCGCATCCTGATCCGAAACTGCTTGGAGTATCACTcacactagctaacgttacagtaGCTAAATGGATAACCTGAGCGAAGCGCTGAAGAAGCTGAAGCTAGCCTCAGCGGACAGCGCCACAGACAGTGTGGAGAGCTGCCTGGACTGCTTGCTCAAAGCACTGGCCCACAACAatGCTAATGCCAGTGAGAAGGTCCAGGAGATGGGCGTTCTCTCCCTGCTTCCCACCCTGCTGGCCCCACAGTCCTCCTGCACACCCAAAGTAGCCAACATCATAGCTGAGGTGGCCAAAAATGAGTTCATGCGGAGCCCCTGTGTGGAGGCAGGCCTCATCCCTCCCCTGGTGCAGCTGCTCCACTCCAAGGACCAGGAGGTGCTGCTGCAGACAGGCCGCGCCCTGGGCAACATCTGCTATGACAGCCATGAGGGCAGGAGTGCAGTTGACCAGGCGGGAGGGGCTCAGATAGTAGCTGGACACATAAAGTCACTGTCCCAAAATACTGACCCGGACAATGGAAAGCTCTTGACTGTCTTTTGTGGCATGCTGATGAACTATAGCAATGAAAATGACTCCTTGCAGGCCCAGCTGATTAACATGGGGGTGATTCCCACCCTGGTGAAGCTGCTGGGGCTCCACTCAGACAACACGGCTCTTACAGAGATGTGCCTCATCGCTTTCGGAAACTTGGCTGAGCTCGAGTCCAGTAAGGAACAGTTTGCCTCCACGAACATCGCTGAGGAGCTGGTACGTCTGTTCCAGAAGCAGGCAGAGCACGAGAAGAAGGAGATGATCTTTGAGGTCCTGGCTCCACTCGCTGAGAATGATGTGATCAAGCTGCAGTTGGTGGAGGCGGGCCTGGTGGAGTGTCTGTTAGATGTGGTGACTCACACCGTGAatggggagagggatgaggatgtGGCCCAGCTCAAGACTGCCTCAGATCTGATGGTGCTGCTGCTTTTGGgagATGAGTCCATGCAGAAGCTGTTTGACGCGGGCAAGGGCAGTGTGTTCGAGAGGGTCCTTTCCTGGGTACCATCCCACAACCACCAGCTGCAGTTGGCAGGGGCACTGGCCATTGCCAACTTTGCCCGCAACGaTGGTAACTGCATACAGATGGTGGAATCAGGCATTGTTCAGAAGCTTCTGGAGCTGCTGGATCGCCACGTGGAGGAGGGTAACGTCACCGTGCAGCACGCCGCGCTCAGCGCCCTGCGCAACCTGGCCATTCCTGTGGTGAACAAGGCTAAAATGCTGTCAGCTGGTGTGTCCGATACGGTGTTGAAGTTCCTCCCGTCAGAGATGCCTCCTGTCCAGTTCAAACTGCTGGGGACGTTACGCATGCTCATCGACACACAGGCGGATGCGGCAGACCAGCTGGGGACCAATTCCAAGCTTGTGGAGCGTCTGGTAGAGTGGTGTGAGGCCAAGGACCATGCAGGAGTCATGGGAGAGTCCAACAGACTGCTCTCAGCTCTCATCCGCCACAGCAAATCAAAGGACGTCGTAAAAACAGTCATCCAGGGGGCAGGTGTGAAGCACTTAGTAGTCATGGCGATGAGCGAACACATGATCATGCAGAACGAGGCGCTGGTGGCTCTGGGCCTCATCGCCGGGTTGGACCTGGTGGGGGCTGAAAAGGACTTTGTCGGGGCTGGCCTGGTGCAGGTGCTCCACAAGCTGCTCTCAGACGAGAGGACCGCCCCGGAGATCAAATACAACTCCATGATCCTCATCTGTGCGGTCATGGGCTCAGAGCCTCTCCATAAAGAAGTGCAGGGCCTGGCCTTCATCGACGTGGTCTCCAAGCTGCGGTCGCACGAGAACAAAACGGTGTCCCACCAGGCGTCGCTCACAGAGCAGAGGCTAACGGCACAGAGCTAAAGGACTCTTAATGCCCGCAATCCCCCACTCCCCCCAATGCCTGCCTCATAGCCAATCCCtgccccccttccctctctctccagaacttCCCTCTGTGTGTCCTATCATCACGTGCCAAGGTATCCTGTCCCTTTGCCCCTGTCAACAGCCAGCTGGTCCCCCCCCTGCCTTACAGCCTGCCTTTAGCCTGCCTTCCCACACTACCGCCGCTCACGCATGCGTACTCCTCCATAATAAAAACAAGACAGCCTTTTCTTTCTGCAATAGACATACAAAGAGAACACTTTTTATGATGACCATAGCTGTGAAACCCGTTGAAAAACAATACAaaagaacaacaaaaaaaactgagTAGGTTGGTCTGAAAACAAACTAAGCAGCCATGCATCCATCCTATGTCCCATCTTAGCTTGAGTTGAAGACGAACTGCATGTTTTAGTCCAGTTGATGGTCCATTTTGACCCTCGCATACCCAAAGTCCAGTTAGTCCAGTTGATGGTTCATTTTGACCCTCGCATACCCAAAACCACAGCCCTGGGCAGATCTTCCAGAGCTGAGTAGAGTTCAGTCATGTTGTACTTAACTCCTTTGAAACGAGTCAATTTTTCTTGATAATCCCAACCgatccttctctcttcccttaaCTTTCATACAAACCCGATTTAAACTTAACTTGCTGTCTCAAACAACCTTACTGTTATATCAAGGGTATGTTTAGAATGGGGAAATGTTACAGAATGTTCAGATGTAAATATATTATGTAGAACAGATATGACCGTCTGTCAAGTAGAATAGGGAATTGTGTTAACTAAATGTGTTAGATTTCTTTCTGCAATGTTGTAAATGTTTAACCCCAACTGAACATACCCTAGGCTGACTCCACTAGCATGTAATAATTCTCACCTAACATTGAGGAATCCTGTATAAGTTACAAGTTAGATCCCCCAGATGAACAGTCACTCTCTCCCTGGTCTCGGAGTGTACAGTGAAGCAGTCAGCCCTACCAGGTGTGTAGTATATGTCTGAATGGATTATGATTAGCCAGGTGCGCCAGGGAAGActgattttggggggggggttccagGGTGTCTTTTTTGCCGTAGCGCTGCACATTTCAGAAGATTTCTAGATCATATTAATGTGGTTCCTAAGTTATTTAACACTTCTCCAGGTGTTGTGAGATCTGATCATCTATATAACGTGACTGCAAAAGAGATGACCTGGAACGTCACCGTCGATTGGAATCTGGCTGCATCGTTTCACGTGGTCTCCCTGACAGCTACGAGAACCTCCCCATAACCCTGTCAGAATGGGCCAGTCCAGATCCCCCATCTACGTGTGGTATTTCTCTATGGTTTATCCCAGCCAGCGCTTTGTTTGCATGTGTGATGGTTTCTCTCCCACTCCAAGTATCGAGAACATGCCCATTCCAGCATGATGGATTACTGCGTTAGGCAACGTCTGGTGACATAggcgttttttttaaatataaattatTTGTTTACTAATCGGTCttgttaaattttttttttttgtcaggtATGAATGGTAATTTCAGATTTGTAACTTTACAAAGACACAATCAAGACGTAACTACAAACTAACTGCGTTACAGTATAAATGTTTGTTGTAAATGTCATTGAGTTGTACATTTGGAAGATTGTAACTCAAACAGATAATTAAAGATGATTGCTGGCGATAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2002010 lncRNA upstream 26826 50276716 ~ 50277372 (+) False G1748499
TU2002011 lncRNA upstream 26826 50276716 ~ 50277372 (+) True G1748499
TU2001995 lncRNA upstream 51632 50247456 ~ 50252566 (+) True G1748486
TU2001992 lncRNA upstream 56993 50244580 ~ 50247205 (+) True G1748484
TU2001986 lncRNA upstream 74423 50229311 ~ 50229775 (+) True G1748480
TU2002036 lncRNA downstream 1658 50357375 ~ 50358092 (+) True G1748517
TU2002082 lncRNA downstream 19890 50375607 ~ 50415360 (+) True G1748560
TU2002100 lncRNA downstream 46904 50402621 ~ 50407729 (+) True G1748578
TU2002205 lncRNA downstream 178292 50534009 ~ 50536926 (+) True G1748657
TU2002238 lncRNA downstream 213547 50569264 ~ 50570060 (+) True G1748679
XM_021578119.2 mRNA upstream 33647 50263911 ~ 50270551 (+) False spata6l
XM_036958103.1 mRNA upstream 33647 50263911 ~ 50270551 (+) True spata6l
XM_021578121.2 mRNA upstream 40444 50257673 ~ 50263754 (+) True LOC110500640
XM_021578117.2 mRNA upstream 64270 50230206 ~ 50239928 (+) True LOC110500637
XM_021578116.2 mRNA upstream 79858 50217151 ~ 50224340 (+) True LOC110500635
XM_036958114.1 mRNA downstream 126125 50481842 ~ 50485546 (+) False LOC110500645
XM_036958113.1 mRNA downstream 127094 50482811 ~ 50485546 (+) False LOC110500645
XM_036958115.1 mRNA downstream 127128 50482845 ~ 50486101 (+) False LOC110500645
XM_021578131.2 mRNA downstream 127129 50482846 ~ 50486101 (+) True LOC110500645
XR_002470135.2 mRNA downstream 133411 50489128 ~ 50494515 (+) False LOC110500647
TU2001255 other upstream 694618 49606153 ~ 49609580 (+) False LOC110500625
TU2001256 other upstream 694618 49606153 ~ 49609580 (+) True LOC110500625
TU2001181 other upstream 857572 49445839 ~ 49446626 (+) True G1747814
TU2000589 other upstream 1326440 48977326 ~ 48977758 (+) True G1747255
TU1999753 other upstream 1940272 48325100 ~ 48363926 (+) True G1746471
TU2002232 other downstream 243193 50598910 ~ 50603277 (+) False LOC110500883
TU2002231 other downstream 243810 50599527 ~ 50603277 (+) True LOC110500883
TU2003188 other downstream 760728 51116445 ~ 51133338 (+) True LOC110500674
TU2003175 other downstream 778372 51134089 ~ 51142008 (+) True gbrap
TU2003336 other downstream 1006969 51362686 ~ 51363380 (+) True G1749651

Expression Profile