RNA id: XM_036958113.1


Basic Information

Item Value
RNA id XM_036958113.1
length 1830
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC110500645
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50481842 ~ 50486101 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCCTGTGTTGCGCATAATTTTGTCCCCTACAGATCTCGGATTGATCCTTCGCTGCTAGTCGATTCAACAATAAGAACCACATTTGAATTGTCATATCTTGAATTGATCATCACGACTGCATTACTGCCGGGGTGTGTCTTTGTGAGTGATCGGTGAAATGGCTGAGCAGGGAGTTCTCCTGGACCAGGGCCAGTTCTGCTGCTCTATCTGCCTGGATTTACTGAAAGAGCCGGTCACTATCAACTGTGGACACAGTTACTGTAGCAACTGTATTGAGGACTCCTGGGATAAGGATGACCCAACGGGTGTCTACAGCTGTCCCCAGTGTAGACATACCTTCTCCCCAAGGCCTGCTCTGATGAAGAATAGCCTGCTAGCCATGGTGGTCGGGAACATGAAGAAGACAGGGCTCCAGGCTACTTCTCCTACTCTGTGCTTtgctggacctggagatgtggAATGTGATTTCTGCAATGGGAGGAAGCAGAAAGCTCTCAAGTCATGTCTGGTGTGTCTAGCCTCTTACTGCGAGACTCATCTCCAGCCTCACTATAATGTAGCTCCATTGATGAAGCACAAGCTGGTCAAAGCCACCACACAATTACAGGACAATATCTGCTCTCATCATGACAAACTGATGGAGATTTTCTGCCGGACCGACCAGCAGTGTATCTGTTATCTGTGTACCATGGATGAACATAAAGGCCATGATACAGTCTCAATCACTGCAGAAAAGACTGAGAAACAGAAGCAGATAGGGACAAGTCAGCAGAAGGTCAACCAGAGAGtccaggagagggagaaagagttgaAGGAACTGCAACAGGCTGTGGAGTTTCTCAGCCGCTCTGCACAGGCAGCAGTGGAAGAAAGTGAGAGGATCTTTACAGAGTTGATTGACTCCATCGAGAGAAGGCGCTCGGAGATGAAGGAACTGATCGTAGCCCAGGAGAATTCAGCTGTGAGTCAAGCTGAAGCCCTCATGGAGCGTTTGGAGCAGGAGATCACTGAGCTGAAGAGGAGAGAGTTTGAGCTGGAAAAGctgacacacacagaggatcacatCCATTTCCTGGAGagttatcagtctctcgcCAGTCCCAGTGTATTTTCAGACTTGCCCACCATCGACGTCTGTCCTCTTCAGTACTTTGAGGATGTGAGTGAGGCTGTGTCTAACCTGAGAGAGAAACTGGAGGGTATCTTGAAGAGAGAATGGTGCAGAATCTCCACCAGAGTGAATCTAGTGGATGTTCTACACCCACCCGAGCCCAAGACCAGAGCCGACTTCTTACAATATTCATGTCGGCTCACCCTGGACGCAAACACGTTATACAGACAACTCTTTCTGTCTGAGCGGAACAGAAAGGTGAAACTGAAGCGCAAAGGCTACTCCTACCACAGTAGTCCAGACAGATTCACTCAATTGTGTCAGGTGCTGTGCAGGGAAGGTCTGTctgggcgctgttactgggaggtggagtggagtgggtggAAGATTTATGCAGGAGTTTCGTATAAAGACATCAGCCGATCTGGGCCTGCAGATGATTGTCAATTTGGACACAATGACAAGTCCTGGAGTTTAGAGTGCTGTAGTAATGGTTACTTTTTCCGACATAATAATGTAAAGACTGAAGTGGCACGCCCTCAGTcctccagagtaggagtgtacctgGATCACCAGGCGggcactctgtccttctacagtgtCTCTGACACAATGACCCTCCTCCACAGTGTCCAGACCAGATTCACGCAGCCCCTCTATCCTGGGTTCTGGCTTCATTGCTTTAAGACCACAGCTGAGTTATGTGAGTTAGACTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2002082 lncRNA upstream 67451 50375607 ~ 50415360 (+) True G1748560
TU2002100 lncRNA upstream 75082 50402621 ~ 50407729 (+) True G1748578
TU2002036 lncRNA upstream 124719 50357375 ~ 50358092 (+) True G1748517
TU2002010 lncRNA upstream 205439 50276716 ~ 50277372 (+) False G1748499
TU2002011 lncRNA upstream 205439 50276716 ~ 50277372 (+) True G1748499
TU2002205 lncRNA downstream 48463 50534009 ~ 50536926 (+) True G1748657
TU2002238 lncRNA downstream 83718 50569264 ~ 50570060 (+) True G1748679
TU2002244 lncRNA downstream 101596 50587142 ~ 50587464 (+) True G1748685
TU2002125 lncRNA downstream 106546 50592092 ~ 50596540 (+) True LOC110500658
TU2002262 lncRNA downstream 131881 50617427 ~ 50617656 (+) True G1748703
XM_036958104.1 mRNA upstream 127094 50304198 ~ 50355717 (+) False LOC110500641
XR_002470135.2 mRNA downstream 3582 50489128 ~ 50494515 (+) False LOC110500647
XR_005038625.1 mRNA downstream 3582 50489128 ~ 50494517 (+) False LOC110500647
XR_005038626.1 mRNA downstream 3582 50489128 ~ 50494517 (+) False LOC110500647
XR_005038627.1 mRNA downstream 3582 50489128 ~ 50494517 (+) False LOC110500647
XR_002470137.2 mRNA downstream 3893 50489439 ~ 50494515 (+) False LOC110500647
TU2001255 other upstream 873231 49606153 ~ 49609580 (+) False LOC110500625
TU2001256 other upstream 873231 49606153 ~ 49609580 (+) True LOC110500625
TU2001181 other upstream 1036185 49445839 ~ 49446626 (+) True G1747814
TU2000589 other upstream 1505053 48977326 ~ 48977758 (+) True G1747255
TU1999753 other upstream 2118885 48325100 ~ 48363926 (+) True G1746471
TU2002232 other downstream 113364 50598910 ~ 50603277 (+) False LOC110500883
TU2002231 other downstream 113981 50599527 ~ 50603277 (+) True LOC110500883
TU2003188 other downstream 630899 51116445 ~ 51133338 (+) True LOC110500674
TU2003175 other downstream 648543 51134089 ~ 51142008 (+) True gbrap
TU2003336 other downstream 877140 51362686 ~ 51363380 (+) True G1749651

Expression Profile