RNA id: XR_005038626.1


Basic Information

Item Value
RNA id XR_005038626.1
length 2110
RNA type mRNA
GC content 0.53
exon number 6
gene id LOC110500647
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50489128 ~ 50494517 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCACAGCAGCCTCCTATGCTACGAACCATGTTCGTATTTTGAAGACCTAGCAGTGACTTTGTCACAGGAGTAGGCTTAAAACTTTGATGGTGCTAATTAGTAGGCCTAAACAACAAGCAAATGGCCACGATAGGAGATTCAGCCCCATTCCAGTGGACAGCAACTGAATTGGAATCCCGCAATGTGACGTTCAGCACCACAGTGCAGTACCCAACACTCAGTTAAAGCAAAAAAAGTGGGGCTGCAGTTAAGACgaacgcgcgcgtgtgtgtgtgggacatgTGCAACCCATAGCTCAAAATGTGTGCTgatctccctctatcctccctacATCTCCTGGTGCCACCACTACATCTGAAGTCTGCTTTCATGTGGCAAGTGGCTCAGCAGCATGACATGATGCAGTATGGGAAGCTGGAGGAGTTTGTGACTGGTAACTAGAGATGGTTCCGGAGCTGCTGACCTTAAGGCAGAGGGTCCATCTCATCCTGGGACTGAGAGCGAGGAGCAAAGATAAAGAAGTGGAGGCATCAACAGATAAAGAAGTGGAGTTGGTCCAAACACTGCTAGAAGAGGgaacacttcagTACAGCTCTAGGTATGATACAGCGCTGCAGATACTGGTGTGGCAGTTCTTTGACAGACTGGAGGAGATGCTGCCAGTGCTCAACTTTACACAGTACTGATGCcactcacaggagGCATGCTTATGTAACCGGTGTGAAGGGGGTGACTGTTGTCGACGTGTGCAGGGGGTCCCTGGTTCAGGCCCTGGTTGGAGCGAGGAGAGGTCCCTGGTTCAGGCCCTGGTTGGAGCGAGGAGAGGTCCCTGGTTCAGGCCCTGGTTGGGGCGAGAAGAGGGCCCTGGTTGGAGTGGGCCCTGGTTTGGGCGAGGAGAGGTCCCTGGTTCAGGAGCTGGTTGGGGCGAGGTGCGGGCCCTGGTTGGGGCGAGGAGCGGGCCCTGGTTGGGGCGAGGAGCGTGCCCTGGTTGGGGCGAGGAGCTGGACCTGGTTGGGGCGAGTAGCAGGCCCTGCTTGGGGTGAGGGGAAGGCCCTGGTTCTGGCCCTGGTTTGGACGAGTAGAGGTCCCTGGTttgggagaggagaggtctcTGGTTGGGGTGAGGAGAGTTCCCTGGTTCGGGCCCTGGTTGGGGCGAGGACAGGGCCCTGGTTGGGGAGAGGAGCGGGCCCTGGTTGGGACGAGGACAGGGCCGTGGTGCGGGCCCTGGTTCTGGCCCTGGTTGGGGCGATGGGAGGGCCCTGGTTGGGAAAGGGCCCTGGTGCGGGCCCTTGTTGGGGCGAGGGGAGGGCCCTGGTGTGGGACCAGGTTGGGGTGAGTggagagatagaagctgttctacttattattctctccctctcagacAGCATCTATTCTCAACCTGACCCCTACTGATCTGGAGGAGTGTgagcagtctgtctctgtctctgaccctgaccctgacccagagCATCTGAAGACACTGCTGCAGAATCATAGACATCCTGGGCACCTTAAAGAAGATGTTCTCTTCTACGATTCTGATACCATCCTGTCCACATTGTTCCTCCTCGTTCCCTCACTGGAGTCTAAACCGACCCAGAGAGGTGGAGGAAAGGGCAGGGTGAAGACAGTGATGTGACGACAGAAGGGGGGAAGAACAAGGCTGGTGAGAAGGGACAGCAAGAAGTCAGCGGGGAAGATGAAGACACCAATGAGGAAAGTGATGAGGACACTAAAAGACTGGAAGAGGCTGGGAACTCTGGGCAGCAGAAACGGCCATCATCAGGGGCCGTCAATGGTATTGAGATTAAGGACAGAATACTTTGCATAgatactgagtatacaaaacatttaagAACACCTGACTGACCTATGAAAAAAGCTATGatttcttattgatgtcacttgttaaatccacttccatcaCTGTAGATAAAGGGGAGACGGGTTAACTTATTTGGGacttgggggcagtattgagtagcttggatgaataaggtgcccagagtaaacttgctattcaggcccagttgctaatatctgcatattattggtatatttggatagaaaacattctgtagttcctaaaactgtttgaatgatgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2002082 lncRNA upstream 73768 50375607 ~ 50415360 (+) True G1748560
TU2002100 lncRNA upstream 81399 50402621 ~ 50407729 (+) True G1748578
TU2002036 lncRNA upstream 131036 50357375 ~ 50358092 (+) True G1748517
TU2002010 lncRNA upstream 211756 50276716 ~ 50277372 (+) False G1748499
TU2002011 lncRNA upstream 211756 50276716 ~ 50277372 (+) True G1748499
TU2002205 lncRNA downstream 39492 50534009 ~ 50536926 (+) True G1748657
TU2002238 lncRNA downstream 74747 50569264 ~ 50570060 (+) True G1748679
TU2002244 lncRNA downstream 92625 50587142 ~ 50587464 (+) True G1748685
TU2002125 lncRNA downstream 97575 50592092 ~ 50596540 (+) True LOC110500658
TU2002262 lncRNA downstream 122910 50617427 ~ 50617656 (+) True G1748703
XM_036958115.1 mRNA upstream 3027 50482845 ~ 50486101 (+) False LOC110500645
XM_021578131.2 mRNA upstream 3027 50482846 ~ 50486101 (+) True LOC110500645
XM_036958114.1 mRNA upstream 3582 50481842 ~ 50485546 (+) False LOC110500645
XM_036958113.1 mRNA upstream 3582 50482811 ~ 50485546 (+) False LOC110500645
XM_036958108.1 mRNA upstream 133411 50304199 ~ 50355717 (+) True LOC110500641
XM_021578135.2 mRNA downstream 10721 50505238 ~ 50508101 (+) True LOC110500651
XM_036958117.1 mRNA downstream 24501 50519018 ~ 50529966 (+) False LOC110500882
XM_036958116.1 mRNA downstream 24514 50519031 ~ 50530191 (+) True LOC110500882
XM_021578142.2 mRNA downstream 68384 50562901 ~ 50578867 (+) False LOC110500656
XM_021578141.2 mRNA downstream 68385 50562902 ~ 50578867 (+) True LOC110500656
TU2001255 other upstream 879548 49606153 ~ 49609580 (+) False LOC110500625
TU2001256 other upstream 879548 49606153 ~ 49609580 (+) True LOC110500625
TU2001181 other upstream 1042502 49445839 ~ 49446626 (+) True G1747814
TU2000589 other upstream 1511370 48977326 ~ 48977758 (+) True G1747255
TU1999753 other upstream 2125202 48325100 ~ 48363926 (+) True G1746471
TU2002232 other downstream 104393 50598910 ~ 50603277 (+) False LOC110500883
TU2002231 other downstream 105010 50599527 ~ 50603277 (+) True LOC110500883
TU2003188 other downstream 621928 51116445 ~ 51133338 (+) True LOC110500674
TU2003175 other downstream 639572 51134089 ~ 51142008 (+) True gbrap
TU2003336 other downstream 868169 51362686 ~ 51363380 (+) True G1749651

Expression Profile