RNA id: XM_021578142.2


Basic Information

Item Value
RNA id XM_021578142.2
length 3770
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC110500656
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50562901 ~ 50578867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTACcacatgtatatagcctcgttattgttatttcagTCACATGAGTATGGCCTGATATATGCTTCTGACATGGTTAAACAGCTTTTTTTTTGCTGCCATCATGTAATGCCAATGTTGACAGAATACGTCACTTACACACATGCTAAACTCTTGTTTAGCATATCAGGTAGTACAGTAGGCCTTTGTTTTTAGTGCAGCAAACCAATCCAATAGAATACTGTTGAGAAATGCGATGGATACAACAACGCCACATCCACTATATCCTGCCAGGGGCGGAAGTCTGGAAGTCTGTTCCAAACAGTAATCATTCCAGCACGGAGTGTGAAGTGTCAGCATCTCTCCCTTCGCACGCCCATAATTCCTGTCATGTCGTTCCGAAGAGGCGTGGTCAGACAGAGCAAGTTTAGGCACGTTTTTGCCCAGGCATGGAAGGCTGAGCACTGCATCGATGATGTCCGAGTGTCCCGTGTCACATGGGACGGGCCCCTCTGCGCTGTGAACCCCAAATTCACCGCAGTCATCATTGAATCAGGCGGAGGAGGGGCCTTCCTCGTTCTGCCACTCAACAAGAGTGGCAGGATTGACCAGGCCACTCCCACGGTGTGTGGACACGCAGCCCCGGTGCTGGACGTCCAGTGGTGTCCCCATGACGACAACATCATCGCCAGTGCCTCGGAGGACTGCACCGTAAAAGTTTGGGAGGTCCCTGATGGAGGGCTGACAGGGCCAATGACAGAGCCTGTAGTAACACTGGAGGGCCACAGCAAACGAGTGGGGATCCTGGCCTGGCACCCGACAGCCTTCAACATCCTCCTAACTGCAGgctgtgataacctggtgtgtgtgtgggacgtGGGCACGGGGGAGCTGGTCTACCAGATAGCCGATGCCCACCCCGACCTGATCTACAGCGTGAGCTGGAACCGGGAGGGCAGTGCCATCTGCACCGTGTGCAAGGACAAGGCGTTGCGTGTCATCGACCCGCGACGGGGCACCGTCCTCAAGGTGAAAGAGAAGGTCCACGACGGCACCAGGCCCATGAGGGCCGTGTTCCTCTCGGATGGGAAGATCCTGACCACGGGCTTCAGCCGCATGAGTGAAAGGCAGCTGGCCTTGTGGGATACGAATGATATGTCTGAGCCAATGGCAGTGCAGGAGATGGACACCAGTAACGGTGTTCTCCTTCCCTACTATGACCCTGACACTAACATGGTCTACCTGTGTGGAAAGGGGGACTGCACCATCCGGTACTTTGAGGTGACAGACGAGTCGCCTTATGTCCATTTTCTCAGCCTGTACAGCAGCAAAGAGCCCCAGCGAGGAGCAGGCTTTCTCAGCAAGAGGGGCGTGGACGTCAACAAGTGTGAGATCGCCAGGTTCTACAAATTGCATGAGAGGAAAGTAGAGCCCATTTCTATGACGGTACCACGGAAGTCAGACCTGTTCCAGGGGGACCTGTACCCGGACACTGCCGGTGTGGAGCCCTCTCTCCTGGCCGAGGATTGGATCGCTGGGCAGGACGCGGCACCCCTGCTAGTCTCTCTGAGCGGGGGCTATGCTGGCACCCCCTCCAAGCACAGAGACAAGCTCAGGAACAAGCCCAAGCTGCAGTCGCAGGGCTCCGGGACGGATTCTACCCCAGTCCCCCGGCAGGCCGCCTCTCCCACGGCAACCACCACCGCCAAGGAAATGGAGAGcgagggggtgggggtggtgcAGCAGAGGGTCACTCGAGCAGAAGGAGAAGGAGCATCCGATAGGGCGAGAAGAGAGGAGGAGGTGCTGAGTGAGGTGCTAGCGGAGGTGAAGGCCCTTCGTTCAGTGGTCTTGGCCCAGGGCCAGAGGATCGAGCTGTTGGAGAGGCAGCTGGTCCGCATCGAGGATGGGGATGTCTGATTGGCCGATGGGGCATCACCACTACACCCAAAGGGCATTCTTACTAAAACTCCATAGACCATAGCCTTACTAGAATCAACAGCAGTACCTTAAGCTGAGTGGGAGGATGTAGTGAAGTGTAGCTCCGTGACTAACTGTGTATATCACAGAGGGGCCGAGAATAAGGTGAACTGTTATAGTGAAGGTGTTTTGTGGGTGAATCTAAATTGTTTCCTTGTTCCCTCGCATCCTCTCCCCTCGCCTTCTCAAAACGCATTGGAGGACAAGGTCAGAGGTTCCTCCCTTCGAGACTTCTCTTCCAATGGGGTTTGAGAAGGAAGAGGGAACAAGGAAACACAATTGAGATGCACCCTACATTCTCTATAGATGCTGCTTCAGTTAGATGGCAGGTGATATAGGATGAATGGAGATCATCTGTATAAAACATCCATACTGCAGTAAGACATGTCACCAGATTTTTTTTGAAGGAGCATCGATGGTGACAGTATTTGAAGGTGTATCACTACAAAACCTAAGACATGCGGAATCAATCATAGCCTACTCACGAATCCTTATGACATCTGGCACAAAGGTCTATGTTAATTTGGTACATTTTGCAAAATGGCACATCAGTATACATTGTATGTGTGTACACCCTCAATAAATGTTACCAAGTAGATTGCCAGATCATTTACAGTTGCTGTGTTCATTGAAGCACTCGCATTGTGAATCCATTAGGGATTGTTTCATCAGGTAGTTACAGCTGCTAATCATGTCATATCAAATGTGATACTCCATTATTAATACTTATACATTTGTACATGTATGGCTTTATACGTTGGCTTTATACATTACCATCATAGGAAGCTATTACTCTAAAATCAGACCATTGGTATTATAAATATAATTGTATATGCTAATAGCGCTACGCTGTTTACAAAACTGCACTGGTTCATTGCGATTGGATTAGTTGTATTGAATTGTGCTGTACAGCGCATATATTGACATATAAAGAAAAACAGATCGGTCAATTTCCAAATAATGTTTATTTTGATATGAAGCTCTTTTTCTTACAAATGATGTGAAGGACGTGAGTTGGAGGTAGCTTAAAAAACATTCCTATCATGTATGTTTCTCTTTTTGGATGAtttttgtaattatttttttCAACCTTAGAAGGTAATACTTAATTTGTGCTCTCCAACTAAGTTGTCTTAGGTGAATGAAGCAACATGCAGTATCATTTGTCACAAAGGGTTATAAATTCCAATGACGGCTTATAACAGAGTTCAAGTTAAGTGTTACCTCAGAGAATGTGTTCCAAGCAGAACTAATGTAATATACCATTAACCATAGCAGTTGTATGAGTGTCACGAGGCACAGAACTTTAAAATGTTACAATGAAATTAgattgaacttttttttttttttttactgtgaatGATGTAATCCAAGCCAGTAGAACCTACTAGACTAATGTAGCAGCAGCTGCTCTGTTTCTATTTGAAGATGGGAAAGAAAGGGCATACGATGCTCGACTGTTGGACGGAACTGAAAAATAATAGTTCACtgttacatttagatttgtttgcATTTATCCGCAGTTTATACCTCACCCCTTTTGCAGCCTTGGGTACTGTTCacatatagcctggtcccagatctgtttaagGCTGTGTTGTCTACAATGACTACAGGAGTTGGCGAGACAGCACAAACAGTCCTGGGACCAGGTTAGTTCACATCGGGCTCATGTGTTTGTTTTATTTACTTGATTAATATTTCTGtatgctctgtcataatacacattttatgtgtgtggttgtgaacAAATAGAGGATGAAAATAACACTCCACTGTGCAAATCTTCCAATAAACACTCCTTTCTCTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2002205 lncRNA upstream 25975 50534009 ~ 50536926 (+) True G1748657
TU2002082 lncRNA upstream 147541 50375607 ~ 50415360 (+) True G1748560
TU2002100 lncRNA upstream 155172 50402621 ~ 50407729 (+) True G1748578
TU2002036 lncRNA upstream 204809 50357375 ~ 50358092 (+) True G1748517
TU2002010 lncRNA upstream 285529 50276716 ~ 50277372 (+) False G1748499
TU2002244 lncRNA downstream 8275 50587142 ~ 50587464 (+) True G1748685
TU2002125 lncRNA downstream 13225 50592092 ~ 50596540 (+) True LOC110500658
TU2002262 lncRNA downstream 38560 50617427 ~ 50617656 (+) True G1748703
TU2002263 lncRNA downstream 39419 50618286 ~ 50618774 (+) True G1748704
TU2002265 lncRNA downstream 41919 50620786 ~ 50621017 (+) True G1748706
XM_036958116.1 mRNA upstream 32710 50519031 ~ 50530191 (+) True LOC110500882
XM_036958117.1 mRNA upstream 32935 50519018 ~ 50529966 (+) False LOC110500882
XM_021578135.2 mRNA upstream 54800 50505238 ~ 50508101 (+) True LOC110500651
XR_005038627.1 mRNA upstream 68384 50489128 ~ 50494517 (+) False LOC110500647
XM_021578143.2 mRNA downstream 13179 50592046 ~ 50598188 (+) False LOC110500658
trnaa-cgc-5 mRNA downstream 19676 50598543 ~ 50598614 (+) True trnaa-cgc-5
XM_036958121.1 mRNA downstream 19932 50598799 ~ 50615280 (+) False LOC110500883
XM_036958124.1 mRNA downstream 19932 50598799 ~ 50615280 (+) False LOC110500883
XM_036958122.1 mRNA downstream 19933 50598800 ~ 50615280 (+) False LOC110500883
TU2001255 other upstream 953321 49606153 ~ 49609580 (+) False LOC110500625
TU2001256 other upstream 953321 49606153 ~ 49609580 (+) True LOC110500625
TU2001181 other upstream 1116275 49445839 ~ 49446626 (+) True G1747814
TU2000589 other upstream 1585143 48977326 ~ 48977758 (+) True G1747255
TU1999753 other upstream 2198975 48325100 ~ 48363926 (+) True G1746471
TU2002232 other downstream 20043 50598910 ~ 50603277 (+) False LOC110500883
TU2002231 other downstream 20660 50599527 ~ 50603277 (+) True LOC110500883
TU2003188 other downstream 537578 51116445 ~ 51133338 (+) True LOC110500674
TU2003175 other downstream 555222 51134089 ~ 51142008 (+) True gbrap
TU2003336 other downstream 783819 51362686 ~ 51363380 (+) True G1749651

Expression Profile