RNA id: XM_021578143.2


Basic Information

Item Value
RNA id XM_021578143.2
length 2064
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC110500658
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50592046 ~ 50598188 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTCTTACATGCCTATCTTTAAGTTTCTGTATCCCCATCTCTTGTTAAAAAAGTGCCACCACTAACACCTGCCTTGTTGAGTCTGTCTCTCTTGAAACCATCATTCAGACTGTTCATTTTATAGCAACACATTGATCCAGTCATTAATAAATCAATGTATGAATCACCTCCAATTGAAAGGAAATAAACTGGATCTCCACCGCAGCAGTTTTACCTTGGATTGAGCAAAGATTTCTTCAACTTTTCTGAGAACTATTTGAAGAGGCATGACTAATTACGATCCAGAAATGAAAGACCAAACCACATCCTCCTTTGTCGTCTTGACTGTCTTCTTCATCCTGGTCACCCTCGTTGCCCTCCTGGTCGTCCTGTACATGTGGCTAAACCGCCAGACTAATGGCCAGTACACAGTCCACCAACTGGTCCTTGGGGAGGGTGGGGCCAGGGACCGGGTGAGGGGCGGGGTCCAAGTCCTGGAGGTGTGGTTCAGGCGTCGCCTTTGGCCTCTCAGTGAGGATGAGGAGACTGTAGGAGAGGAGGAACGGAGAGAcaaagaggaggatgtagagagagtgagtgagggaggggaaagtgagggggaggggaagaaggaggagggggatgagagggagggcaGAGTGGACGACTCTTTGGATGACTACTCCAGTGCGGAGGGCTGTGGCCTGACGGAGAGTGTGAAGGTCATGGacgagaagaaggagaggagagagtgtgaggggaAGCGAGAGGAGAATATGGAAGAAAAGGGGGATAGCAAAGGTGATGAGGGAGCAGTGGGAGGAGAAGAAAGTGGACGGGGAGGTTTGCTGATACACCTGCATCAGTCCTCTGGTAGTGCTATCTGGTCTGAAGATTATGAGGGAGGCAAAGACAACAATCATGTGACTGTATTGTGAGGAAAGGATCAGAAAGGGGAAAGAGTTCCATTAATACATTTTTGTACAGTAATAGCGCTTGACAGAACATTGGCTacttcatcatcaccatcatcatcattgtcatAATTGTCATAATTTTAAACCTTACAAACCAGTGTTATAACAATCAAGGCAGAAAACAACAGAGTGTACTAAATCAATCCAATCATCAAAGTGACTGACAAGAGCAACAATTGCAGCTTGAATACATGAAGCTATATTAATGTATTTTAGATATAAAATGTAATTTTTAAACGGTTTCAAAGTTTCATGGGTTTCAAAGTTTTGGGGTTTGCACTGTTGCTATGAGATGATATGTATTGTAAATATTTGTGTTCTGTATATTTTATGAATTTAATAGCTATTTAGATccttcttcctggagatctactgtcctgtaggttttcagtctagtcctaatttagcatatctgattcaACTAGTTAAGGTActgttgagcagctaattagtagaatcaggtctgttaaattagggttggactgaaaacccacaggacggtagatctccaggaagagggttgtgCAGCCCTGGCCTATGGCTTGACTTTGTGCTATACTGTTTCATGTCTTATGTGCATGATGTTTATTTCCAGAGTGACAATTTTATACTTTTTGTTATCTGATAcaacttaaaggcccagtgcagtcaaaattatGTTTTGTATCATGTTGTACAGCAACTCATGGAAcaaacactgtaaaagtgtgaaaagatttgatcagtgttattcctgatagttgctggttgaaaatacaatctacacagggcctttacatttttatttttgatgAGAGACTGagtgtaatttttttttaaaggctggAACATGTTGTTGAATCGTATAGTTTTATGTTAtaattctgtaatgtattgattgttgttgCCTTTTTGGCCAGGTCTCCATTGAAAAAGAGGGTCTTAATGTGCTTTTCCTGTTTAAATGAAGGTTAagaacattttttaaatcagcaggtttgcatggcattcccctcccactcagaccacttccTGACAGTCCTATCAAAAACTATTATAGTAAGgttcttaattgttacccagaagtaatttgatattgatataaaaacggTTGCATGAGGCTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2002244 lncRNA upstream 4582 50587142 ~ 50587464 (+) True G1748685
TU2002238 lncRNA upstream 21986 50569264 ~ 50570060 (+) True G1748679
TU2002205 lncRNA upstream 55120 50534009 ~ 50536926 (+) True G1748657
TU2002082 lncRNA upstream 176686 50375607 ~ 50415360 (+) True G1748560
TU2002100 lncRNA upstream 184317 50402621 ~ 50407729 (+) True G1748578
TU2002262 lncRNA downstream 19239 50617427 ~ 50617656 (+) True G1748703
TU2002263 lncRNA downstream 20098 50618286 ~ 50618774 (+) True G1748704
TU2002265 lncRNA downstream 22598 50620786 ~ 50621017 (+) True G1748706
TU2002287 lncRNA downstream 112742 50710930 ~ 50711195 (+) True G1748728
TU2002294 lncRNA downstream 171534 50769722 ~ 50770727 (+) True G1748735
XM_021578142.2 mRNA upstream 13179 50562901 ~ 50578867 (+) False LOC110500656
XM_021578141.2 mRNA upstream 13179 50562902 ~ 50578867 (+) True LOC110500656
XM_036958116.1 mRNA upstream 61855 50519031 ~ 50530191 (+) True LOC110500882
XM_036958117.1 mRNA upstream 62080 50519018 ~ 50529966 (+) False LOC110500882
XM_021578135.2 mRNA upstream 83945 50505238 ~ 50508101 (+) True LOC110500651
trnaa-cgc-5 mRNA downstream 355 50598543 ~ 50598614 (+) True trnaa-cgc-5
XM_036958121.1 mRNA downstream 611 50598799 ~ 50615280 (+) False LOC110500883
XM_036958124.1 mRNA downstream 611 50598799 ~ 50615280 (+) False LOC110500883
XM_036958122.1 mRNA downstream 612 50598800 ~ 50615280 (+) False LOC110500883
XM_036958125.1 mRNA downstream 667 50598855 ~ 50615280 (+) False LOC110500883
TU2001255 other upstream 982466 49606153 ~ 49609580 (+) False LOC110500625
TU2001256 other upstream 982466 49606153 ~ 49609580 (+) True LOC110500625
TU2001181 other upstream 1145420 49445839 ~ 49446626 (+) True G1747814
TU2000589 other upstream 1614288 48977326 ~ 48977758 (+) True G1747255
TU1999753 other upstream 2228120 48325100 ~ 48363926 (+) True G1746471
TU2002232 other downstream 722 50598910 ~ 50603277 (+) False LOC110500883
TU2002231 other downstream 1339 50599527 ~ 50603277 (+) True LOC110500883
TU2003188 other downstream 518257 51116445 ~ 51133338 (+) True LOC110500674
TU2003175 other downstream 535901 51134089 ~ 51142008 (+) True gbrap
TU2003336 other downstream 764498 51362686 ~ 51363380 (+) True G1749651

Expression Profile