RNA id: XM_036958124.1


Basic Information

Item Value
RNA id XM_036958124.1
length 5395
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC110500883
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50598799 ~ 50615280 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTGGGCATTGCTTCTGGAATTTGATTGGTTACTTTACCAATACACTGTGCGGGGTGAAACACTGGTCCAAGCATTCACGCCAAcatttagtcaaatattattttTGCCGGGAGCACCCACGGAATAATTTGCAGTGGTCCTCTCATATAAATGCAACCCACTCATAAAACCAAGACACATCATGGACCAATTGCACGACCTGACTATGCAGACCCAAATGCGCTTTCATAGAGATTCAAACAAATAGTCTAAACAAAGCTATTGCATTGAACGTCAGGGCAATTATATAACGTGAATCCGTGATTTTTATCGCCACAAACGTCTTGGATTTGCAATACTAGGCTATATTTTCTAACAGAACGAGATGGATAATCGCTAAACCGTAAAACCGAAAATACCATAGCCCACACTGGATTGGCTTTGATTGGAGGTAGCAGAAGGCGAACTAAAAGTAGGCTACCCGGCATTGGAACGAAATATTGTTGTATGCTACCTGTACGGGATATCAACATGGAAGGAGTAGGATGTTACTAGCGTCGGCCGTGGTGGTATGGGAATGGCTGAACGAGCACGGGCGCTGGCGGCCTTACAGCCCAGCGGTCTCTCACCACATCGAGGCAGTCATCCGCAACGACCCACGGGGTGGTAGTGTTGTCTTAGGCCAGGTGGACACTCGCCTCTCGCCCTACATCGTCGACTTGCATTCCATGCACCAGTTCCGACAAGATACTGTTCTGTGGCGTGACCCTCGTCTTTCTACCGTTACCCCAGGTACCCTCAGACCGGTTCGCCGCAGCTTCTACGACCCCACGTCGGCGCCGGGTCAGGGCTGGCTGTGGGAGTGGGAGAACGACACAGGCTCGTGGACAGCCTACGACACAGAGGTGGGCATCGCCATCCAGGCGGCACGCGACCGCCAGCAGCCCTGGCTGGACCTGGCGCCACTGGGATTCTGCTACCTCATCCACTTCCAGAGTATGACCCAGATCAACGGGCAGACGCAACGCTGCCGCCGCATTCAGCGCCGCTCTGACCTGGCTTACCCACTTGTTTCGGGTCCCCTTCCCAAGTCACACCACGCCTGGGGGCCCGGCCCCGGGGGACTGTTGGGGGTGTCCGGAGTAGGCATGGGGGTGGGGTTGAGCGGGATGGGGAACGGGAACGGTAGCGCCTACCCCAGCGGTGCCCTGCCAGCCTCCGCAATCACCTCCCTGGGCCAGCCCTGCGCCTGTCAGCAATGCATGCTGCTCCTAAGCGTCAAGGCGGGCGCCATGGCAACAGCCCACACCCTGGGCAGGAGGCCACCCCAGAACAAGCCTCCCAGCCCCAAACTGGGTGGGGGTTACTCGGCCATGGGGGGGTCCTACTCTCTCACCCTCCCACGTCCCCCCTCCTCCATGGGCAGGTCCCTTCCTCCCCACAGAACGTCTGTGGGCGGAGCTAGCGGTGGCTTGGGGGTCGGAGGGGGCGGTGGCTTTgcccactcactctccctcctggGTTCGGCCACCGCtgccctgtccctctcctccacacGGCCCCCTCCCCCGCCTCTACCCCCCCTTCcgcctcctccgcctcctccgcCCTCCTCCATCACTTCCAACAGTGCTActcttcccccctcctcttccttctccatgGCATCCATGGCTTCCTCTGCCCCTCTGTCGATGCCCGCGCCCCCCCCTCTCATCTCCACATCAGCTTCCTCCTGCACCCCCTCGCCCTCTGCCCGCGTCCTGGGGCCGGTGTCTTCAGCGGCGGCGGCCTGTGCCGCCCCTCTACCTCCCCGTGCCAGCCTGGCTGGGCTGAGCCGACCCGCCCTGCAGCGCATCGCCATGGCCCAGTCCAGAGCCCTTATCGCCTCCGGAGTCCCAACGGTTCCTGTGAAGAACCTCAATGGATCCAGCCCTGTTCACCCTGCATTGGCAGGTATTACAGGGATCCTGATGAGCGCCGCAggacttcctgtctgtctgacccGACCCCCCAAGCTGGTGCTCCACCCCCCTCCTGTCAGCAAGAGTGACATTAAGCCCGTTCCCGGCCTCGGCCACTGCTGCCGCAAGACCACCAAGAAGCAGGCTCGCAAAGgcAAGACCCCTGAGGAAGTAGTGAAGAGGTACCTTCAGAAGGTACGCAGTCCTCCAGAAGAGGACTGCACTATCTGCATGGAGGCCCTGCCTGGGCCCTCGGGCTACAAAGGCCCCGGTGTTGGGGGCATCCAGCGGGCAGAGTCGGTGGGTCGCCTGGCCCAGTGTGGGCACCAGTACCACCTACAGTGTCTGGTGGCCATGTACAACAATGGCAACAAGGATGGCAGCCTTCAGTGCCCCACCTGCAAGACCATCTACGGCGTGAAGACGGGCAACCAGCCGCCTGGCAAGATGGAGTATCACGTTATCCCCCATTCGCTGCCTGGCCACCCCGACTGCAAGACCATCCGCATCATCTATAACATCCCGCCAGGCATCCAGGGCCCTGAGCACCCGAACCCAGGCAAGCCCTTCACCGCCCGGGGATTCCCCCGACACTGCTACCTCCCTGACAGCGAGAAGGGACGCAAGgTACTGAGGCTGCTGCTGGTGGCGTGGGACCGGCGGCTCATCTTCTCAGTGGGCACATCCAGCACCACGGGCGAGTCGGACACAGTCATCTGGAATGAGGTGCACCACAAGACGGAGTTCGGCTCCAACCTGACGGGACACGGCTACCCCGACCCAGGCCACCTGGACAACGTTCTGGAGGAGCTTAAGGCCCAGGGGATCACCGAGGAGGAGTGCCTACCCAGAGACTGAGCTAAAGACGGGCCAATGGGGAAACAGCAACAGAGAGACTTGTCAGACACTGGAGGGCAGAGCTAAAACAATGAACatacagagtcagagagacaaaggaatggagagggggagtCATAGACATATGAATATGTTTTAAAAAAGAGAAGTACAGAAATGAACACAGACGGTACACTTGTGACACCCACAGAAACAGACAGCCTGAAAGACAGCATACGAGAAGACATGAATGAACCAATGAACAGATGAGCCAAAAAAAAGAACCAACGGGGGACATAAAACAAATAGAGAAACAGACCAATAGACTTTCTGGCTCTAGTTTCTAGGGACGCTAACCGAGGTACGACATTAGAAACCCTCTGAACAGGTGGGCTGTGGGTCGGCTCCGCTGCATGGGTCACTTGTATGATGGAATGTATATTTTCTTCTGCTACATTAATGGGGCTGTCACAAAATGTCATTCAGTGAGAGGTTTGAGGCCACAGTGCACATGCAATTCAGTGTTGGACAGAAGCTGTCGTTAAGACCCTGAGAGTTTGACAAGAATGTACTGAATCTTAATTGGTCCATTTGAATTCATTGGTGTACCAAGTTTACCAGAGCGTCTGTAAGTGGTAGGATGAGCGCTACAAACGAGTATTAAAGGGAATATGCTTAATAGGGTATTGAATGGAAGAGAATACTAGGCTTAAAGTATTAGACCTTTGGCAGCATAGTAACAAATCTCTCGTTACAGAAAACATAACCTAACATAGCAGGCTTAAAAGAATCGTCTGAGCTGCGTTTCTTTCTTTCTAGTCCTgacaagaaaataaaaaaactgttAGGGGATTATCTCCTCTGAATCTGCACTGTttaaccaatccagtaaatgtggaggagttgAGATGGAGTGTCCCCAAAGACGGTTAGCTCTGTGATGTCGCCTCGTTAACGTCCAAAAGAAGAAGTCCGTCTCTATTTCCATTTGCTATGAAAACCGGGTGCGTCCGGTTAAACCTACCCCACTGAGGGTGCAGAAAACTTTACAGAGAACGTTCAAAATATCTCAAGTTTATGACTGGATATGTGTGAGCATGAGTGTTTACTGCCCTCTAGTGGTACTTATCGAAAATACATTCCCTTTTCCTCTCTAGGTTCTTATCAGTATTTTATTAATTGCTGTACCATTTGGAAAATGCATTGTTGTACATTTTAAATAGTTGATATATATTGGCTCAGTTGAGTTGAGTATCATTTTTACATTCCATTTTGTTCTTAATTTTTAACATTGTACGTTGTCTATTTGATTGCCAGAGCATTATTTTCTATATGTGGCATTGTAAGGAGACGTGTCAAGCTTGAGTCTTCTCGGGAGGGCTCCTGAGTATTACGAGCCACTATGAGTTGTTCAAAAAGTTTCACTGAACATCGATTTTAGACTCATCCATTGCCAATCAATATGAATGATTTGGGAACCCTCTTGATGGGGTGGGTGAGTCTAAATGTACAAAATAACAGTCCTCCTCAGACcatgggtgcatctcaatagtcttgTGTAGCTTCCTCTCCTATTCTTTCATGTCAATTCAGATGAAAGAACAGGAATGGAAAAAAGGCCCCTATAGACAGTTGAGAAGTCAGAAATGAAGTTATGATTGGACCTGCCACCAGAGGTCAGATTTGCACTGCACAGGGcagactctctttttttcctttAGTCAAAAGGAAACATGGAAAGTTAGATATAACAGTTAAAACTACTTTGAGTTTCATTGTATTTTCTTTGTTTTGGACACCGTTGGCACCATTGGCAGCTCTAAGGAAAGCAAACCTATTGTTTTTGCCATAACGAGGTACAATTTGAAAGATTTGCTCTGTCGCCAAAACAACCTGTGGTCAAGCAGTCCAGTCGGTTTGTGTCAGGTTCCTGACAGACCTGCTTATAAAGCGGTACCGTTGACAATATTTATCAGTATGTGTTAACATACAATGTTAGGCCAACATTTATACTTTCTGTATGCAATGGATGTATGTGTTCATGTACACGACTTAAAACCATTAAACCATTTTTAAAGGTATAGCGTAACTGTTCACTTAATACCTCCTTTATTTAATGTGCTCTCTATTTTTTTAATCGTTTGTATCAAATTGTTTTGTTCAAATAATTCAAAACCACTATTTTTTCACTTTGAGGTATTGTTTAGCCACATTTAAAGCTGTGTGACTACATGAAGACTTACATACCCATTCTACTTTGTGAGTAGGGGTACATGCATTTGGTACGTCATGTGACCTTGTAATTCTTTCGACGACTCCTGCAGGTGGATTGGGAAATGTAGGACTTTATGTAGTCAGTCGTGTTTTATGTCAGTTCTTGCAATGCTCAGTTTGGCACATATCATTTTCTTTCCCAGGCACATGTCTGTAAATGGGAATGGAACAATGGTTGAAGGCTCATTCACACTTTGTATAAAAACCTCTGTAAACGTTGTAATGGCGAGAACGAGTGGCGTGGAGACATCTATGTTGGCAGAGAAAGTAGTAACATGTGTAAAAGTAAAAAAGATTTGAAGTAACCGTGGGACTATTAAATTAACATGACTATTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2002125 lncRNA upstream 2259 50592092 ~ 50596540 (+) True LOC110500658
TU2002244 lncRNA upstream 11335 50587142 ~ 50587464 (+) True G1748685
TU2002238 lncRNA upstream 28739 50569264 ~ 50570060 (+) True G1748679
TU2002205 lncRNA upstream 61873 50534009 ~ 50536926 (+) True G1748657
TU2002100 lncRNA upstream 191070 50402621 ~ 50407729 (+) True G1748578
TU2002262 lncRNA downstream 2147 50617427 ~ 50617656 (+) True G1748703
TU2002263 lncRNA downstream 3006 50618286 ~ 50618774 (+) True G1748704
TU2002265 lncRNA downstream 5506 50620786 ~ 50621017 (+) True G1748706
TU2002287 lncRNA downstream 95650 50710930 ~ 50711195 (+) True G1748728
TU2002294 lncRNA downstream 154442 50769722 ~ 50770727 (+) True G1748735
trnaa-cgc-5 mRNA upstream 185 50598543 ~ 50598614 (+) True trnaa-cgc-5
XM_021578143.2 mRNA upstream 611 50592046 ~ 50598188 (+) False LOC110500658
XM_021578142.2 mRNA upstream 19932 50562901 ~ 50578867 (+) False LOC110500656
XM_021578141.2 mRNA upstream 19932 50562902 ~ 50578867 (+) True LOC110500656
XM_036958116.1 mRNA upstream 68608 50519031 ~ 50530191 (+) True LOC110500882
XM_021578144.2 mRNA downstream 6003 50621283 ~ 50624034 (+) False msantd1
XM_021578145.2 mRNA downstream 6005 50621285 ~ 50624034 (+) True msantd1
XM_021578147.2 mRNA downstream 14132 50629412 ~ 50707579 (+) False LOC110500660
XM_036958126.1 mRNA downstream 14132 50629412 ~ 50707579 (+) True LOC110500660
XM_021578148.2 mRNA downstream 96216 50711496 ~ 50732973 (+) False LOC110500661
TU2001255 other upstream 989219 49606153 ~ 49609580 (+) False LOC110500625
TU2001256 other upstream 989219 49606153 ~ 49609580 (+) True LOC110500625
TU2001181 other upstream 1152173 49445839 ~ 49446626 (+) True G1747814
TU2000589 other upstream 1621041 48977326 ~ 48977758 (+) True G1747255
TU1999753 other upstream 2234873 48325100 ~ 48363926 (+) True G1746471
TU2003188 other downstream 501165 51116445 ~ 51133338 (+) True LOC110500674
TU2003175 other downstream 518809 51134089 ~ 51142008 (+) True gbrap
TU2003336 other downstream 747406 51362686 ~ 51363380 (+) True G1749651
TU2003334 other downstream 803689 51418969 ~ 51450475 (+) False G1749650
TU2003752 other downstream 1456320 52071600 ~ 52079002 (+) True G1750012

Expression Profile