RNA id: XM_021578144.2


Basic Information

Item Value
RNA id XM_021578144.2
length 2076
RNA type mRNA
GC content 0.49
exon number 3
gene id msantd1
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50621283 ~ 50624034 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagggagtggttaagagagggggagggagggagaaagaggggcctCCTCCTAGTTGCTAGGGCAACTTGACATCACAGTGACGATTTCCTCCATTTAAAAGCTTTTAACCGGATCCCTCTCCTGCCCTAGGGCCCATTTTGAGTCCTCTTTCAGCTAAGCTCGGGGGAAGGGCACAGCACAGGCAGAGCGGTGTGTGACTGTTTGCAACCACATTCCACTGACATAATGCTAGACAGCAGAGAAGGGCTTCAAACTAAACCGTTTTTGGGGCCTATTTTTGTTTACAGAACCAAAACAGGAAGAGAGTGCTTTTGAGAGGGCTTTCAAAATGGCTGCAGAGGAGAGTTTTAGTTACCTCATTCCGGGCCACAGCGAGAAGCACAGAAGGGCCCGAAACTGGACCGATGCAGAGATGAAGGGGCTTCTGTATGTATGGGAACAGAATGTCGCTGAGCTGAAGAAATGTAAGAGGAACGCCAAGATCTACGAGAAGATGGCCCAGAGGTTCTTTGAGCTCACTGGAGAACAACGCCACCGGGAGGAGATAAAGATGAAAATCACCAACATGTCTTTCCAGTACAGGCAAGTGAAAATGAAGTGCACAACCAATGGGAGCGGTGGGACACCCGACTGGCCGTACTACAAAGCAATAGAGAAGCTCCTCACCAAGACTGACGACAATGGGACTATGAACTCGTTTGAGCTCCAGTCTCCtggcccctccacctccacagaggCCTCGATGTCCCATGCAGAGGGCCTCCCCACGGGCTTCCTTCCGGAGTACACAGGCTCCTCGGACGAGATGGAGATGAGGAAGGACCTGATTGGATGGGAGAGCTCTGGCAGCCTGCACTCTGGACTTCCCTGTCCCGATTCCCACCCGGCGCCGGCCAAGAGGAAGAAAGTGCACCAGCACCTGTCTCTGAAGCGGCGGAAGCTGAAGGTGATGGAGGCCATGCTGCAGGAGCAGCGGAAGGTGAGCCGGGCGGTGGAGGAGACGTGCCGCGAGGTGCGCCGCGTCATGCACCAGCAGAACTTCCTCCAGGTGCAGAGCCTGCAGCTCCAGGAGCGCATGATGAACCTGCTGGAGAAGATGATCCAGCCACTGACGGCCCCCACGTCAGCCTGGGGTGCTGCTGCCCAGCCTGGGGTCAAAGAGCCAGGCCAGGGATGAAGGGTCCAGTGAGGGGTcaaggagggtggtggtggtcagGACTCCCTAAAAACACGCCACTTCGATACaagtgacttttcgtagcaggttaggtgaGCATTTCTGCTGACCCTAaaacctaaccctttccctaaccttaacctaattctcctaacctgctacattaattatcctaacctgctgcgtaagttctcctaacctgctacgaaaagtcataGCTGTATCGAAATTGCGTCCCGGTGGTGCTCACTATATGGCTATGCTAGAAAATAAATGCCATATGCTACATGGCTATGTGTTATATGGTACATGGCTATGTGTTATATGCTACATGGCTATGTGTTATATGGTACATGGCTATGTGTTATATGCTACATGGCTATGTGTTTTATGGTACATGGCTATGTGTTATATGCTATAATATGGCTATGCTTCACTTTTTAACAACTGATTGAGAGTAAATAATGTCAATCTCACCCTAACCTTACCCCTGACCTGAATGGTCAATggcagagagaggaaaaagcaactTGCTCATCAGTGCTGAGGCCGGTTTTGTCCTTTCTAGCATGGCTATCTAGTGGTTgctgtgagagagtgagaggtcaGGGGTGAGGGTTCAGAGGTGTATGGCTGAGGCTGCTTTAAGACAAGTTCCACCATTCATTGATCGTTTTGAGCGATATCTACAAGCTAGGAAAATACTGTGCTTATTCACATTAACAAAAGACAACGTTTGTCcacaaattctatattttaatGACAAAAGGCATGGGCATTTGGTGTTGTATCACTTATTTTCTAATGTGTGTCCTGTTATGGTGTATGCATCTTCCAACTAGCATAGCCTACTTGTTTGAAATGTATGACTGAAATAAAAACATATGTTCTGTTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2002265 lncRNA upstream 266 50620786 ~ 50621017 (+) True G1748706
TU2002263 lncRNA upstream 2509 50618286 ~ 50618774 (+) True G1748704
TU2002262 lncRNA upstream 3627 50617427 ~ 50617656 (+) True G1748703
TU2002125 lncRNA upstream 24743 50592092 ~ 50596540 (+) True LOC110500658
TU2002244 lncRNA upstream 33819 50587142 ~ 50587464 (+) True G1748685
TU2002287 lncRNA downstream 86896 50710930 ~ 50711195 (+) True G1748728
TU2002294 lncRNA downstream 145688 50769722 ~ 50770727 (+) True G1748735
TU2002901 lncRNA downstream 152341 50776375 ~ 50776590 (+) True G1749267
TU2002904 lncRNA downstream 201778 50825812 ~ 50912133 (+) True G1749270
TU2003086 lncRNA downstream 358214 50982248 ~ 50986719 (+) True G1749434
XM_036958121.1 mRNA upstream 6003 50598799 ~ 50615280 (+) False LOC110500883
XM_036958124.1 mRNA upstream 6003 50598799 ~ 50615280 (+) False LOC110500883
XM_036958122.1 mRNA upstream 6003 50598800 ~ 50615280 (+) False LOC110500883
XM_036958125.1 mRNA upstream 6003 50598855 ~ 50615280 (+) False LOC110500883
trnaa-cgc-5 mRNA upstream 22669 50598543 ~ 50598614 (+) True trnaa-cgc-5
XM_021578147.2 mRNA downstream 5378 50629412 ~ 50707579 (+) False LOC110500660
XM_036958126.1 mRNA downstream 5378 50629412 ~ 50707579 (+) True LOC110500660
XM_021578148.2 mRNA downstream 87462 50711496 ~ 50732973 (+) False LOC110500661
XM_021578149.2 mRNA downstream 87650 50711684 ~ 50732192 (+) True LOC110500661
XR_002470143.2 mRNA downstream 110689 50734723 ~ 50759405 (+) False LOC110500662
TU2002232 other upstream 18006 50598910 ~ 50603277 (+) False LOC110500883
TU2002231 other upstream 18006 50599527 ~ 50603277 (+) True LOC110500883
TU2001255 other upstream 1011703 49606153 ~ 49609580 (+) False LOC110500625
TU2001256 other upstream 1011703 49606153 ~ 49609580 (+) True LOC110500625
TU2001181 other upstream 1174657 49445839 ~ 49446626 (+) True G1747814
TU2003188 other downstream 492411 51116445 ~ 51133338 (+) True LOC110500674
TU2003175 other downstream 510055 51134089 ~ 51142008 (+) True gbrap
TU2003336 other downstream 738652 51362686 ~ 51363380 (+) True G1749651
TU2003334 other downstream 794935 51418969 ~ 51450475 (+) False G1749650
TU2003752 other downstream 1447566 52071600 ~ 52079002 (+) True G1750012

Expression Profile