RNA id: XM_036958126.1


Basic Information

Item Value
RNA id XM_036958126.1
length 5415
RNA type mRNA
GC content 0.55
exon number 19
gene id LOC110500660
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50629412 ~ 50707579 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGACGCTTTGTATTCCCCAACAATGAATGGAGGCGGGTGGAGTTTGTCATCCGTGGTATATGGAATAGCATAATACTGGAGGGAAACTTTGGAAAATATAAGTTATGTTACGGAAACTACGCACGTGTGGATTTCTAACTCGTTTGTACTGTTGGGAGTATGCAACCTTTAAACTGACTTCATGAAGCTTTTAAACGTGTTTTACACTTCAGTGTTGGCACTAAAAAGATACCACTCCATAGTGACATTCGGTTCCAACGCTCTGCATCTGAAAAAACGGCCACATTCAGGATGAGGATGCCGGGACAGGCTGAAGGGGCGCGGAGGCGTCTGGATTTGACCTCTCCTCATGAAGTCAGACGGGTTGAGGTTGTTCGAGGACGTGTAGGATACGGGTTTACCTTATCGGGACAAGGCCCGTGCCTCTTGAGTGGAATATTGGAGGGCAGCCCTGCAGACCATGTGGGACTGAAGCAGGGGGATCGTATAGTGAGCGTCAACGGAACTGATGTGGCAAAGGCATCCCATGAGGTTGTGGTGCAGTTGATTGGCACCTGTAAAGGCCCCTTACTTTTGGTGGTGCTTGTCGGGAGTGGGCCCTTGGTGGACCTATCCTCCAGCGACGAGGAGTTAAGGATTTCTAGAATAGAGGGAAAGGAGCTTTTTCAGAAGGGGGGAGTTTTTCGCACTGTTTCGGCCCATTCTGGCAACTCGTCATCTAACTCCGTAAATGCCAACCCAGCTAATCCAAGACCTGTGTCAGAACCTGACATGTCCCACTGGAACCAGCCTTTGAACTCCAAAACTCAGCCTGTCTTCCTTTCTGCGGAGGAAACCGCCCGAGTGGCAGACGGCGACTCTGTTTTCAACGAGCAGGAGGATGATGTGAATCGAGACTGGAGTATTCTGAACACAGCCATGGTGGTGGGCTACCTGGGCTCTACTGAACTGATCTTGGCCTTGTCCAGACACGGCTCAGAGGACGACTGCCTACAGGTGATCCGCGGGTGTATCAGACATATGGGCACAGAGCAGGAGACCCACACGCTGGTGATGATGAAGATCATGTTCGACTGCGTCCGCCTCTGTGATGACACAGGAGCCGTCCTGGCCGCCTTCCCTGCCGAGAACCTTGTCCTGGGCGTGGTGTGTTCCGAGGACAGGCGCTTTTTTTGTCTGGTCACCACTGCACACATCTCTGGCGGCCACGTTGGCCAGAACGGTCCCCTGAGTACCTCATGCCACGTCTTCTTCATCGACCCTGAGCTGTGCCACCACAGTGACCACCTGGGCATCACAGGGCGCTTCGGCATCGACTGCACCCCCGACCCAGACACCCAGGGCTGCCTGGAGTTCCCCCTCACTCCCCCCTCCGTTCTCCAGTTTGTATCTGTCTTATACTGTGAAATGGGGGAGGCAGTGGAGAGGCTTAGAACCAGGCTGGACAGAGACTCAGCCCACCACCTCCACACGCAACAGAATCGCAGCAGCACCGGTAAGAATGGCAGCGCCAGCAGCAACGGAGACAGCGGGATCGGAAACACCTCCCCCCCTGAGGAAAGAGCGGACAGGGATTTCCCCATCGCCCGCGGAAACGACCCTGGGGGCCAGCTCCCCAGCTGTCCATGGGAGGATTACCCCCAGGCTGAAGGAGACCTCACCCAAATAGTAGCTCATCAAAATGGCTGGCTAAAACTAAACGGCCATCCTAATCCAGGCAGCACAAATTCCCTTTCCGAATCTCTACCTGGCCCGGCGTCATTAACCGGCCTATGTGGTGGTCCTCCTCCCAGGTTGGAGTTTCAGTTCAAGCCCCCGCCACCACCGTACCCTCTGGCTAAGAACCAGAAACAGAACCTAACAGGAGGAGGCTCCTTCAGAAGCAGTCAGCGCTGGTTCTCTATGAGTGTTAAGCAGAGGTGGCCTAAAGGCCGATGTGGAGAGCCCGAGTCCCAGGCAACACCGGCCACTAACAGCTGGTCAGGACCAGCCACGGTGGGTAGCACCAACGCTCTGCCACCCCCCATGAGCCAGATCCCACCAGACAGGTACCTGGCAGCAGAGACCATGATGCTGCCCCAGAGGGAGGAGTGGGCCAAACGACTCTGGAGAGTAGAATCTGGAGAGCTGCTGAATGGAAATCCCAGGAAAGATGCCAATACCAAGGGCTCCAAGTTCTGGGGCATTGGCGCCGGACGCTCCTCTGGCCGTCGCTCCTTTGGACACTCCAAGAGGCTCAGCCTGGCACGATCACTGGACGACCTGGAGTCGGCTGCTTCCTCAGAAGGTGaccatgGTGGTGGTGTGCAGCTCCAGGGCTGctgcagccagagcagtctgaaCAGCAATGGCAGTCTGCCCGGCGCCGGCAGCCACAGGAGGCTGTCAGAGCGCCGGGTGGCCAGCTGGGCCGCCTGCTTCGAGCGCCTGCTCCAGGACCCCATTGGCGTCCGCTACTTCTCAGAATTCCTCAAGAAGGAATTCAGTGAGGAGAATATCTTGTTCTGGCAGGGCTGCGAATACTTCAGTCATATACCTGTAACGGACAAAAAGCAGctatCCCAGAGGGCAGGGGAGATCTACAACAGCTTCCTGTCCAGTAAAGCCACCACGCCGGTCAACATCGACAGTCAGGCCCAACTGGCCGACGACGTCCTCACCTCCCCATGTCCAAACATGTTCAAGGCTCAGCAGTTACAAATCTTCAACCTGATGAAGTTTGACAGCTACTCCAGGTTCCTCAAGTCTGGCCTGTATCAGGAGTGCATGCTGGCCGAGGTGGAGGGACGACCTTTACCTGACCCCTACCAGATCCCTTGTAGCCCCGCCCCCTCCAAGCACAGCGCcagctcctccctctccctctccacgcCCATTAAGGAGGCAAGGAAGCAGAGGTCAGGAAGGTCACTTAATGAGGACCCCGGAGACGAGCATGATGAGCATAAGAAACGGGGCACCTTCTTTTCTTGGTCCCGGAACCGGAGCTTCGGAAAGGGACCCAAGAAAAAGGACATTGGAGAAATCAACCTCGATTCCTGGAGCAGCAACGGTCGGAGGGAATCACAGGGCTCCTTGTCCTCAGGTGCCAGTCTGGAGCTGGCCACTTCCTGTTCAGCGGGCAAGATCGAGGGGGACAATCGTCACTCAGTGCCGGTGTGGGACAGGGTGTCCTCCGCCAAGCACTGCAATGTGACCTTGCCGGATGGCTCGTGCTCCTCTGTGACACTGCGGCCGGGAGCCACCATCAGGGAGGTGCTACGGGTCCTCTGTCAGAAACTCTGCATCAATATGGTTGCTGTCGACCTCTTCCTGGTGggaggagagaagCCTTTAGTGCTGGACCAAGATTGCATGACCCTCAGCTCACGGGAACTCAGGATGGAAAAGCGCACCCTTTTCAGGCTGGATCTGGTACCCATTAACCGGTCCGTAGGCTTGAAGGCCAAACCCACCAAACCCGTCACCGAGGTCCTGCGCCCTGTCGTGGCGAAGTATGGCCTCCACCTCAACGATCTGGTGGCCAAAATAAGTGGAGAAACAGAGCCTTTAGACCTAGGGGCGCCAATATCCAGCCTCGACGGCCTGCGCATAGTGCTGGAAAGAGCAGATCCCTCTGCTTCAGGGAAAGATTCCAAGTCCAAGTCAGCCTCCTTGAAAGCCCATCTGCCATCTTTGACCAGCAGGAGTCTTTCAGCAACAGGAGATGACAGGTCATCAGGAAAGGCAAGCGGACAAGACCCGTCGCTCCCTACGGAAAAGAGAAAACCGAAAAAGATTAATATAGATGAAGCTGAAGaaTTCTTCGAGCTCCTGAGCCGGGCACAGAGCAGCCGGAGAAATGCCCAGAGAGGCCTCCTGAACAAAGAGGACCTGGAGTTACCTGACTTCCTGCGGTTAACCACCTGCTCCCCCTCCACTGCCTCCCTAGACGCGACTTGCTCCACCCCTACCTCCATCAAACAGGGCCAGGGGGCAGGCAGGGTGAACGGGGTGGGCGGCACCCCCGCCCGCGGTCCCCTCAACGCCAGCCTGCGCTCCGAGAGCCTGGACTCCTCCCTCAGCAGCGCCAATGGACACTCCCACTCCGCTGCGGGGCGCAGGGCACTGCCCCCAGCCCGCCACCCCATACCCACCTTCGGCGccaccctctcccccatcccccgccTCTTGGAGGCTAGAGGCCCGGGCCTAAGAACGCTGGAGGAAGACACCCATGCTGACCTGACCCTGGTGGGAGAGGGGGACATCAACAGCCCCAACAGCACCCTTCTGCCCCCCTCGCCGGTGCCGCTGTCCTACGAGGGCAGCCTGTCCGAGGCTAACTTCACCCCTCCTGCGCCCTGCGCCCAAACCTCCCAGGATGGATGTGGGAATGGCCAGTCCAGCTCAGAATGTTCTTGCTTGCACGACAGCCAGTACGCATCTGTATGCACGACAGCCAGTATGCATCTGTCTGCATGGAGGAACGCGGCATGCACACAATTAGTGACAGTACATCTGAAAGAGAGAAGAAAAAGAGCATGTGCTCTTGACCGCTCCCACAAGAGGGCGCCATATCTTGGAGCACTCCGCTCTCAGCCTGCCCTACAGGAGGTGATGGATGTGGAGGGAGTGTGtctagaggagggggaggaggagggggaggagagagataaggtGGGGGAGGTCACCATCATCCGGGGAGAAGACTCCGAGCTCAGCCTCAGTTTCCAAGGGTATGCCACTGAGCTCCGGCAGTGCCAAAGCCGGATGAAGACCTCCCAGGTGCCCCTCAACGCCCCCGACCAATCAGAGGGGATCCAAGACTCCAACACTGACATGTACAAGGCCACAATCGTGTGAGTTCTGAGGCTGAGCAACCTTCACCAGCACTTTCCAAGCTTGAGTCACTGTCTGTTCAAACAGGAACTTACTTGACAAACGAGGGACTTTAACCGCAAAAAGCTATTGATTTTCACTCCAGAACTGATAGAATGTATAATAATTGTTTTGGTGatatatattgtattatttaaCATTACTCTGGTGTGTGTTTAGTGGGTATACATGAAAAGAAAATGAATTGCCAGTTCAGATTGATGAACAATTTGGTAATAACCTACTGTTTGGGAATTTATCAAAGGATAGGCGACCTTGTTTAAAACATGGTTGTTGATACTGCAGGTACTGCAAGGCAGGGGATATGGAACTTAACCTCTTTCAGCTGGATGAGAAGATAGGATTCACAAATTGTAGGAACACGAGAAACTCCTCGCAACTCTAGTACATTTTACTGTATTATTCtagtcggcaggtagcctagtggttagagcgctgggccagtaaccgaaaggttgctcgatTGAATCCCcgcgctgacaaggtaaacatctgtcgttctgcccctgaacaaggcagttaacccagtgttc

Function

GO: NA

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2002265 lncRNA upstream 8395 50620786 ~ 50621017 (+) True G1748706
TU2002263 lncRNA upstream 10638 50618286 ~ 50618774 (+) True G1748704
TU2002262 lncRNA upstream 11756 50617427 ~ 50617656 (+) True G1748703
TU2002125 lncRNA upstream 32872 50592092 ~ 50596540 (+) True LOC110500658
TU2002244 lncRNA upstream 41948 50587142 ~ 50587464 (+) True G1748685
TU2002287 lncRNA downstream 3351 50710930 ~ 50711195 (+) True G1748728
TU2002294 lncRNA downstream 62143 50769722 ~ 50770727 (+) True G1748735
TU2002901 lncRNA downstream 68796 50776375 ~ 50776590 (+) True G1749267
TU2002904 lncRNA downstream 118233 50825812 ~ 50912133 (+) True G1749270
TU2003086 lncRNA downstream 274669 50982248 ~ 50986719 (+) True G1749434
XM_021578144.2 mRNA upstream 5378 50621283 ~ 50624034 (+) False msantd1
XM_021578145.2 mRNA upstream 5378 50621285 ~ 50624034 (+) True msantd1
XM_036958124.1 mRNA upstream 14132 50598799 ~ 50615280 (+) False LOC110500883
XM_021578148.2 mRNA downstream 3917 50711496 ~ 50732973 (+) False LOC110500661
XM_021578149.2 mRNA downstream 4105 50711684 ~ 50732192 (+) True LOC110500661
XR_002470143.2 mRNA downstream 27144 50734723 ~ 50759405 (+) False LOC110500662
XM_021578150.2 mRNA downstream 27145 50734724 ~ 50765893 (+) False LOC110500662
XM_021578151.2 mRNA downstream 27147 50734726 ~ 50767433 (+) True LOC110500662
TU2002232 other upstream 26135 50598910 ~ 50603277 (+) False LOC110500883
TU2002231 other upstream 26135 50599527 ~ 50603277 (+) True LOC110500883
TU2001255 other upstream 1019832 49606153 ~ 49609580 (+) False LOC110500625
TU2001256 other upstream 1019832 49606153 ~ 49609580 (+) True LOC110500625
TU2001181 other upstream 1182786 49445839 ~ 49446626 (+) True G1747814
TU2003188 other downstream 408866 51116445 ~ 51133338 (+) True LOC110500674
TU2003175 other downstream 426510 51134089 ~ 51142008 (+) True gbrap
TU2003336 other downstream 655107 51362686 ~ 51363380 (+) True G1749651
TU2003334 other downstream 711390 51418969 ~ 51450475 (+) False G1749650
TU2003752 other downstream 1364021 52071600 ~ 52079002 (+) True G1750012

Expression Profile