RNA id: XM_021578148.2


Basic Information

Item Value
RNA id XM_021578148.2
length 2540
RNA type mRNA
GC content 0.50
exon number 14
gene id LOC110500661
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50711496 ~ 50732973 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACTGTCAGAAATCCTGTAAGACTAGGTCTCATTGTGTAATTTACTATAGCATCTGCAGGGATGTCAAATATTGCAACCTTGGAAAATTAGAGGCTTGGTTATGGGACAGTGGGTATTCTTGCCACAGCACGCCGCACTTGGAATGTTTACAACTCTGGGACGCTGCATGGCGACCAAGCTCAGATCGAGAGGAGGGATCCGGCACCGTCACCCGCCCCCATCTGCCAAAAGGTTACTTTCCATTACATCAAAAGATCCGCTCTTTCAAGATATTGCAGGTTTCATCGTGGGCGTGTCGTGAGGGAAAACGTTCGATGTTTTGCGTAGAATAATGACCATAACCGAAAAGTCTGTCTAATGACCAAATTGATCTACCCAATAGAGTTTGAGTTTACAGAGGACAGTATCGCTCTTGCAGGATTTCCCACGTTCTCAATGACCAAAAGCAGACGGAGTTCTCTGGAGTTGACAGATAAGACGTGACAACGTTTATCTAACGGACCTGCTTCAGGAAATTTACTTCAAAACATTTTGCTTGCGCATGATATCTAAGTCAACGACCAAACAAGCTAAAATATTATGATGCCATACTTTGTGTTACTTTTCCTACCGTATGTCCTCAGTGCACGGACGCGAATGGTACTCCCTGGATATGAAACGTTACGTACGAGAAATGGGAACGAAAATAGTCATAAAGTTCTTACAGTAGATAGGAAAGAATGTAAGTTCCCGTTCCGTCAAGGAGGAAGCATTCACCACCACTGTATCACCATCAGTTCATCCAGACCTTGGTGTTCTCTGACGCACAACTTTGATCGGGATTTTCTGTGGGGATACTGTGCAGCTGTGACCACTCAACCCAGTGTGTTCGTCCACTCATCACGCAGATTCACAGACCTGTGTCAGGTGAATCCCTGTCAAAATGGCGGCATCTGCACTCTGGTCCCCCACAGACGCTCCTTTGAGTGCTCCTGTCCAGAGAACTTCACCGGGAGGCACTGTGATCAGAGGAAGTGCTATGAAACCATACACCTGAGATATTATGACATCGGAGAATCCTGGGGAAGGATCTACCACCGTAATGTGGAACGGTGCACATGTGTGGACGGGGAGATCTCCTGTGAGAGAGTCCGCTATACCGTCTGCAGTGAGAACCCCTGTGAGAACGATGGCACGTGCCGTCTCATCACAGCCACCAGGGAGGAGGTGTGTGCCTGCAGGCCTGGCTACAGTGGACCCTACTGTAGCATCGCTCCAGAGGCAGAGTGCTATGACAACAAGGGCACAGACTACCGTGGCGTGGTGAACACCACCGTCTCTGGTGCCCACTGTCTGCCGTGGAACTCTGACCTGTTACATGATGAACTCCACATGGGTACTGTGGAGCGCGCCACCCTCAGGGGCTTGGGGGAACACTCCTACTGCAGAAACCCAGACGGGGACAAGATGCCGTGGTGCTACACCCTCAATGACAGAGCCATCTCCTGGGAGAACTGTGACGTTCCGTCTTGTGTCATGCGTTTATCTTCTTCTCGGAGAGTGGTACAGGTGCCACGGCCGCCACCGCCACCTAACGTCCTCCCTGACACCAACCAAACCAATGACGCCAAGCCAGCCAAGAAGCCTGTGTGCGGAAAGAGGCATAAGAAGAGGATATCAGTGGCCAAGGGTCGCATCCTGGGTGGCAGCTCTGCCCTGCCCGGTACCCATCCCTGGATGGCAGCCCTCTACATAGGAGATGACAGCTTCTGCGCGGGCACCCTGGTCTCGTCCTGCTGGGTGGTCTCTGCCGCACACTGCTTCTTTCGCAGTCCCCTTGTGTCGAAGATCCGTGTGATTCTGGGTCAGAATAACTTCAACGTTACAACTTCGGACACCAAAACCTTTGGAGTGGAGAAGTACATCTTTCCAGGCCGTTTCTCTGTCTTCAATCCAACTCTCCATGACATTGTtcttgtgaaactgaaaaaacaaGATGGCCACTGTGTGAGAAGGACTCAATTTATACAGCCTATCTGCCTGCCGGATAAAGCCATGACCTTCCCAGACTACTACTGTTGTCAGATCACTGGCTGGGGCCACATGCATGAGAAGGCAAATAAATACAGCAACCTGCAGGAGGCCGGGGTGAGGATCTTCCCGTTTGAGAGGTGTATCCAGCCTGAAGTCTACGGCAACCATGTGACATCCAACATGGTCTGTGCCGGGACCGACCGATGTGTGGATGCCTGCCAGGGTGACTCAGGAGGCCCCCTGGCCTGTGTGAAGGATGACGTCAGCTTCCTGTATGGAGTCATCAGCTGGGGTGATGGCTGTGGAAAGACTGGGAAGCCTGGTGTCTACACCAAAGTTGTCAGCTACGTCAACTGGATCAACACAATTATCAAGCGCAAGCCCAAGTCTAAATGAATGGACATCAATCAGGCTTATTGTATGGACCTTACAGCTTGTGTCCTATTGTGGAAGAATCGTGATTTTTACATAACTGTGAAATAAAGATTATTTTGTGACTGAATAAACATTGTAAATATTGTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2002287 lncRNA upstream 301 50710930 ~ 50711195 (+) True G1748728
TU2002265 lncRNA upstream 90479 50620786 ~ 50621017 (+) True G1748706
TU2002263 lncRNA upstream 92722 50618286 ~ 50618774 (+) True G1748704
TU2002262 lncRNA upstream 93840 50617427 ~ 50617656 (+) True G1748703
TU2002125 lncRNA upstream 114956 50592092 ~ 50596540 (+) True LOC110500658
TU2002294 lncRNA downstream 36749 50769722 ~ 50770727 (+) True G1748735
TU2002901 lncRNA downstream 43402 50776375 ~ 50776590 (+) True G1749267
TU2002904 lncRNA downstream 92839 50825812 ~ 50912133 (+) True G1749270
TU2003086 lncRNA downstream 249275 50982248 ~ 50986719 (+) True G1749434
TU2003091 lncRNA downstream 257769 50990742 ~ 50993138 (+) True G1749436
XM_021578147.2 mRNA upstream 3917 50629412 ~ 50707579 (+) False LOC110500660
XM_036958126.1 mRNA upstream 3917 50629412 ~ 50707579 (+) True LOC110500660
XM_021578144.2 mRNA upstream 87462 50621283 ~ 50624034 (+) False msantd1
XM_021578145.2 mRNA upstream 87462 50621285 ~ 50624034 (+) True msantd1
XM_036958124.1 mRNA upstream 96216 50598799 ~ 50615280 (+) False LOC110500883
XR_002470143.2 mRNA downstream 1750 50734723 ~ 50759405 (+) False LOC110500662
XM_021578150.2 mRNA downstream 1751 50734724 ~ 50765893 (+) False LOC110500662
XM_021578151.2 mRNA downstream 1753 50734726 ~ 50767433 (+) True LOC110500662
XM_021578152.2 mRNA downstream 109436 50842409 ~ 50844632 (+) True LOC110500663
XM_021578153.2 mRNA downstream 169813 50902786 ~ 50905298 (+) True LOC110500664
TU2002232 other upstream 108219 50598910 ~ 50603277 (+) False LOC110500883
TU2002231 other upstream 108219 50599527 ~ 50603277 (+) True LOC110500883
TU2001255 other upstream 1101916 49606153 ~ 49609580 (+) False LOC110500625
TU2001256 other upstream 1101916 49606153 ~ 49609580 (+) True LOC110500625
TU2001181 other upstream 1264870 49445839 ~ 49446626 (+) True G1747814
TU2003188 other downstream 383472 51116445 ~ 51133338 (+) True LOC110500674
TU2003175 other downstream 401116 51134089 ~ 51142008 (+) True gbrap
TU2003336 other downstream 629713 51362686 ~ 51363380 (+) True G1749651
TU2003334 other downstream 685996 51418969 ~ 51450475 (+) False G1749650
TU2003752 other downstream 1338627 52071600 ~ 52079002 (+) True G1750012

Expression Profile