RNA id: XM_021578153.2


Basic Information

Item Value
RNA id XM_021578153.2
length 1797
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110500664
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50902786 ~ 50905298 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACGAGAACGAATGCATGCATGCAAATATGGATGGACAATAAAGCTAGAGCTTGCATAGACAGAAGTAGCCAATAGGAGGTACTGTGTCATTCTCCAAGAAGTGGGCTCTTCTTCTACCATGCATCCCAGCCCGGGGACACAGCCGTATCTCTGCTTTGATTTGCTCCCTAATTGACCTAAATAAAGTATCTGAGAGACAGGGTCCCTCCAACCCCTCAAGGCAGACTAGAACACAGTGTAGTAGCTCAATGCGAGTAATTATCTTATTTTCTATAGTAATCTTGCTCGCTTCCCCCACTGTCCAATCGCAAGACGCAATTTCTTTGCTACGCTTGGATCTCGCGCGGTTGAATTTACAGTAGTTTATCTGCGGATTCTCACGGTCTCACACTCTTCACTCGAGCTCTCATGGATAGCTCGACAGACTTCGATAGAAATAGTAGGCATAACTGAAAAAAGCAAAAGATACATCCAGTAATGTCTAAACAGCACGTAAGTATTTAAAAGTAATTTATTTATCGGTGACTAGGTGGTTTGAAAACGTCGAAATATGCTTGATAAGGAACCGGAGTCTCAACATCATGGTCCAACGTCAAGAAGCTCATCATTTTCAATTGAGAATTTACTTCGCtctactaggactacagacaggcGGTCTACGACCGAAGatgagtttttttttaaagaaacggGACTGTCTTTCAACCAAGTCGCTGTCCTTGAGAGCCGCTGGGGCCAAGTGGAGCGTCAAGTGTCCTACTTTGGGTTAAACGCCCAACGCCTTGCTGAAGCCGGTTGCATTTCGGACTGGTGTGGGACATCGCCCAATAAAGCTTGCAGCGATTTACAGAGTCCGCAGTGCCACTCCAGCAACTCAGATGACCCCGGATACTCCCTACCAACCAGCGACCGGGATTCCCCGGCTCTACCGGAGCCGGTGGAAGACCACGACGAACGGAACGAGAGGACAGAGGGCAGTCAGACAGACGACAAGGATGACGAAACAGGATCCTCCTGCTTCGCGCGAGACGACAGTGACACACCTGATACGAAAGCAGCTCGCAAGAAGAAGACCCGCACCGTGTTCAGCCGGAGTCAGGTGTTCCAGCTGGAGTCCACCTTCGACATGAAACGCTACCTGAGCAGCACTGAGCGGGCGGGGCTGGCCGCTTCTCTACAACTTACCGAGACTCAGGTTAAGATTTGGTTCCAGAACCGCAGGAACAAGTGGAAGAGACAGATAGCTGCCGACATGGCGTCCACGAGCATCTCCTTTTCGGCCCAAAGGATTGTCAGGGTTCCTATTATTTACCACGAGAACGCTTCACCTGGGACACTGAACGCAAACCTGGCACAGGTGTCGCCACCCTTAGTGGGTTTTTCGAGTACTGTGAATTTTCCCATCTCCCAGTTCACACACCCCATGTCTTTTATAAGATCACAAATGACAGGCCTAGTGTGAGGCACACattattggtgtattatattaaaCTAACAATTTAAGTATTGGACACAGTAGAGATAATCCCTTCAAGAGTTTATTGCTGAGGGTGACTTTATTGCAAATCACCAAGATCACAGCCACATTCATAAGGGGATGACACTCATTGAGCAACCTGTGTAGCATATAGCCTCAACTAGTTTATTTTAATATGCAAGTTATGAGCATGGGGTTACTGGAACTGTATTATTTCATATTTCTTATTTAAACTGGGTTTCAGTTGACATTTTGTACACAAGAGTTGTCTGATCAATGTAAATAAAATAGATGAAGTGCACACCATGTTTCATGTTTA

Function

GO: NA

KEGG:

id description
K09349 NKX5, HMX; homeobox protein Nkx-5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2002901 lncRNA upstream 126196 50776375 ~ 50776590 (+) True G1749267
TU2002294 lncRNA upstream 132059 50769722 ~ 50770727 (+) True G1748735
TU2002287 lncRNA upstream 191591 50710930 ~ 50711195 (+) True G1748728
TU2002265 lncRNA upstream 281769 50620786 ~ 50621017 (+) True G1748706
TU2002263 lncRNA upstream 284012 50618286 ~ 50618774 (+) True G1748704
TU2003086 lncRNA downstream 76950 50982248 ~ 50986719 (+) True G1749434
TU2003091 lncRNA downstream 85444 50990742 ~ 50993138 (+) True G1749436
TU2003129 lncRNA downstream 130272 51035570 ~ 51036032 (+) True G1749470
TU2003145 lncRNA downstream 149944 51055242 ~ 51055457 (+) True G1749486
TU2003157 lncRNA downstream 180271 51085569 ~ 51085830 (+) True G1749498
XM_021578152.2 mRNA upstream 58154 50842409 ~ 50844632 (+) True LOC110500663
XM_021578151.2 mRNA upstream 135353 50734726 ~ 50767433 (+) True LOC110500662
XM_021578150.2 mRNA upstream 136893 50734724 ~ 50765893 (+) False LOC110500662
XR_002470143.2 mRNA upstream 143381 50734723 ~ 50759405 (+) False LOC110500662
XM_021578148.2 mRNA upstream 169813 50711496 ~ 50732973 (+) False LOC110500661
XM_021578155.2 mRNA downstream 1182 50906480 ~ 50909607 (+) True LOC110500665
XM_021578158.2 mRNA downstream 148088 51053386 ~ 51067912 (+) False LOC110500669
XM_036958127.1 mRNA downstream 150864 51056162 ~ 51067912 (+) False LOC110500669
XM_021578159.2 mRNA downstream 151302 51056600 ~ 51067912 (+) True LOC110500669
XM_021578163.2 mRNA downstream 194702 51100000 ~ 51101654 (+) True LOC110500672
TU2002232 other upstream 299509 50598910 ~ 50603277 (+) False LOC110500883
TU2002231 other upstream 299509 50599527 ~ 50603277 (+) True LOC110500883
TU2001255 other upstream 1293206 49606153 ~ 49609580 (+) False LOC110500625
TU2001256 other upstream 1293206 49606153 ~ 49609580 (+) True LOC110500625
TU2001181 other upstream 1456160 49445839 ~ 49446626 (+) True G1747814
TU2003188 other downstream 211147 51116445 ~ 51133338 (+) True LOC110500674
TU2003175 other downstream 228791 51134089 ~ 51142008 (+) True gbrap
TU2003336 other downstream 457388 51362686 ~ 51363380 (+) True G1749651
TU2003334 other downstream 513671 51418969 ~ 51450475 (+) False G1749650
TU2003752 other downstream 1166302 52071600 ~ 52079002 (+) True G1750012

Expression Profile