RNA id: XM_021578159.2


Basic Information

Item Value
RNA id XM_021578159.2
length 4072
RNA type mRNA
GC content 0.51
exon number 15
gene id LOC110500669
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 51053386 ~ 51067912 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACACTGACTTTGGTgccagTGCTGTGGTGCCCTGTAGGGTCATGCTGATGGACCAGGACACTCAGTGGCTGTACCACCTCCTGGCCGAGGTCCAGTTGGAGAGGTTCTACCTGCGCGTCCGGGACGGCCTCAACATCACCCGCATAGAACACTTCAACTATGTCAAGGAGTCTGACCTCGAGCAGATCGGCATCAGCAAACCAGGACAGAGAAGATTATGGGATGCTGTGAAACGGTACAAGATCACCATGAGACCAAAGTCATGGATCACCAAGgTCTTCAGTGGCCGTGGTCCGGAGGGCGGTGACCAATGGGGCAGTATGGGGCAGGGCCAGGAGACAGGAGGGCGGGCACTCACCTGTCTGATTCAGGACAGTGAACTATCTCTAGGGGAGAAGCTGGGCATGGGCTCCTTCGGTGTGGTGAAGAGGGGAGAGTGGCAGACCCCCACTGGGAGAGTGCTGCCAGTTGCGGTGAAGACTCTAAGGAGCAGCCTGTCCAGACAGACGGACACGCTGACAGACTTCCTCCAGGAGGTGACCACCATGCAGTCTCTAGACCACCCCAACATCATCCGCCTCTACGGAGTGGTGCTCACACAGCCCCTGAAGATGGTGACAGAGGTGGCATGTCTGGGATCCCTGTATGACACGCTGCGCTCTCGTCAGTACGAGTACCCCCTGGCACGCCTCTGGCTCTTCGCCACCCAGATAGCAGCAGGCATGGAGTACCTGGAGGGTCGCAGGTTCATTCACAGGGATCTGGCTGCCCGgaacgttctcctggcatccaggGAGATGGTGAAGATCGGGGACTTTGGGCTGATGAGGGTCCTGAGTCAGGAGAAGGACCACTACATGATGACAGCCCACAGACGCATCCCCTTTGCCTGGTGTGCCCCAGAGAGTCTGCGTTTGGGCTCCTTCACCCATTCCTCTGATGTGTGGATGTTTGGGGTCCTCCTCTGGGAGATGTTCACCTATTGTGACGAGCCTTGGCTGGGGTTATCTGGCAGACAGATCCtgtggagggtggagagggagggagaacgtaTGGAGAGACCCCCTGACTGTCCTCAGGAACTCTACTCTGTGATGAGAAAGTGTTGGGCCTGTACCCCATCCGACCGACCCACCTTCTCCCAGCTCACCACTCTGGTGGCAGAGGCTCAGCCTATAGAGGTGCGTGCTGTGAGGGACTTTGCGGAATCTAGGAAACTCACTCTGCTATCCAACGACCTAGTGACCGTCATAGACCATGGTCTGGAGCTGTGTGAGTGGAAGGGTCAGAACCAGAGGACCCTGACGGTGGGCTGGTTCCCACCGAGCCTGGCTGCCCCCAGCAGCACTCCTGCTCCTCCCGCTGCCCCTGGTCCTCCCGCTGCCCCTGGTCCTCCTGCCTCCAgcctcatctctccccctctgaaGGGCAGTCTGCAGCACACAGGGCATGGAGACACCCACCCTGACCGTAGCTGGGGCACCCCGGAGCGCCTCGATGAGAGCGTAAACTGGAGGAGCGGCCCAGCAAACAGAGATCGCGAGGAAGAGGGCTCCAACTTACAGAAAATGTCAGGTATGACCAGGAGTCTGGAGTCTGTCCTGAGCGATCCCCAGAGCTGGACTCAGACGGTAGTAGGGGTCAGGGTGGACCCCCGTCGTGGACCCGTCCCTGCCATGGGGGCCCAGAGCGTGGGGATGCAGCAGGACATCCGTAGGTTCAGCGAGGCCAGCATCAACCCCCCGGCTCGCCCGCCCCCACCCAACCTCAAAAACTTCAAGATCCCCCAGGTGGTGAGCCGAGATCAAAGGCCTACTGCAAATCCAGCCCCAGGCACCTCATGGCCTCCACAGCCTCCAACACATCCACAGCAGCAGATGCTACATCcagcccagcctcagccccaaccACCGCAGACCATGGGAGGAAGCAATCTGGGCAAGATGGCCCACATGGCACGGTCAACACCAACACTGGATAACTATGGGGACAAGGAGAGGGATCAAGAAAAGGAGAGGGTGGtgagggaacgagagagggagaggtaccCGCCTCAAGTGCAACGCACCAGGGAAGCCGTCATAGCACAGGTCATGGAGGCGGTGCATGGAGTAACCAATGAGGAGGTTCGTAATGCACTTCGCCGCAATGAGTGGAACCCTGTTAGGGCCCAGCAACAACTCAAGatGGAGCAGCTGTACTCTCTGAGCCTGTGTTCTCGTGACGACTGCGTCATGATCCTGTCCCGCTACCAGTGGAATCTACAGCTGGCCAGTCGCTACCTGTTCAGAATGGTACGGGAGGACAggactggaggaggagagaggaagaggaaggatggagagagagggacaccccCTGTTGCCATGGCGAGACGAGGAGGAGtatgagaggtggagggatactgGAAACAACAGACAATAAAGCTTTACAACGTTTAAGAGGAACTGACAAGGAATTTTAGGAATGAAATGGATGGGAGGAGGATAAAAAAGGAATTGAATATATATGGAGTGAACCATAAAGACGTTACAGTCCTTTATCCTTTTTTTTACAGTTCTGTTAAAcgtatttttttgtgacgaacTGCCACATCCTCTCTGTTCTCAAAAATAGTTGTATCATGATGAATTTGTATATATTGTATTAGCATTGATTATATTTGTTGAATAAATTGTTGATACAAAATGTGCATGAGCTAGTGGTGTACATGTGGCTCATGCCCCTCAATTTTACAAATAATTAGAGCTGGGATGTCGTAGAATCAAGAGAATACACAGTGTGATGTAATTTCCTTTCGCAGGAAGTGTTTGGCATTTCTCACTGCCTTGACTTCCTAATTGACCTCTGGTTGTGAGCTTCCCATTATGCTGTCTATAAAACTAGAGCAGAAGGATGTTACATGGGGCTGGAGAATCCAGCACTACTATGGAGGGAGATGACCTTATGTTAAACTGTACTTCAGCATGCTTCCAGCAAGGGGGGGGAGTAATGAGAACACCTCCCTTATGTTGTGAACCTGCCTTACTCCTTTCAGGCCCCCCTGGCACTTTGCCACTAGTATTTTGTGTTTGAGGTTTGAACCGTCAACCTGGTGACCAGGATCTCTTTAAAATCAAGCACGACTCTGTGTAATTGAGATTGACAATCACAATAAACGAATTGATCATGCTTTGAAACCGCAAGACAATTTCCCATTGAGCCGAAACATGCAGCATTTAACCGTGAACGCAAGGAACATAAATAAAATACCCTTTTTTTTTTATACTCGGCCTAAAATATAGACAACTGCACATGTATGAACCGTTGTATTTAATATTAGAACTTGGGGTGTCACGTTCACATAGATGAATGCCTACACAAAGTGTTTGAACCCAAGTCTGTTTGTGATCGGGGCATCTGTCTCGTGTATTCCTAGTGTCATTTATTTGTTCATGGGGTGAGTATGAAGTTGGCTCTGCCAGGGTtaggcaaccctggtcctggagtgctgcatcagttcatgtttttgttttaactgacatggaagaccaggtgtgttgaatttaggcaatcactgaactgatcaattagctcagtgtGGTGCCTACTGTACATGTAATTATGACGATCCTGCTGTACCTGCAGCACTCCAGGAACAAGGTTTCCTACCCTGCTTTGTGTACAATTTGGGGAACGTTTTTTGTATTAGGTCAAACAATTATTCTTTGTGGTAAATAGAGCAGTTTGGGATCTTTCGTTCAGTGTGACCTGTAGTTTTACACTAGTGCCGAGATTCAATATGTCAAGTTCTAGGCATTGCAGCTTTTATGGTGGATTGTATAGCAGcccatacaacaacaaaaaacatctctagctttaAAGGCAATTGCTGACTGAGCcaacatatgcagtgtttaccggTAATAGGATTATCCTTTCAAAACCGCAATGTCTATAACCTGCGAatggattgaatcccagcctagGTTTTGTGAGTGCCAGAGAGAGCTAGGCCACTGAGGGTGGGGTGGAGAGCAGTGTTTATGAAGCCCTGTTAAATAAATGACATGTGTTACTAATTGGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2003145 lncRNA upstream 1143 51055242 ~ 51055457 (+) True G1749486
TU2003129 lncRNA upstream 20568 51035570 ~ 51036032 (+) True G1749470
TU2003091 lncRNA upstream 63462 50990742 ~ 50993138 (+) True G1749436
TU2003086 lncRNA upstream 69881 50982248 ~ 50986719 (+) True G1749434
TU2002904 lncRNA upstream 144467 50825812 ~ 50912133 (+) True G1749270
TU2003157 lncRNA downstream 17657 51085569 ~ 51085830 (+) True G1749498
TU2003187 lncRNA downstream 75073 51142985 ~ 51143430 (+) True G1749521
TU2003202 lncRNA downstream 75806 51143718 ~ 51144006 (+) True G1749536
TU2003206 lncRNA downstream 98437 51166349 ~ 51166714 (+) True G1749540
TU2003235 lncRNA downstream 132748 51200660 ~ 51200930 (+) True G1749567
XM_021578155.2 mRNA upstream 146993 50906480 ~ 50909607 (+) True LOC110500665
XM_021578153.2 mRNA upstream 151302 50902786 ~ 50905298 (+) True LOC110500664
XM_021578152.2 mRNA upstream 211968 50842409 ~ 50844632 (+) True LOC110500663
XM_021578151.2 mRNA upstream 289167 50734726 ~ 50767433 (+) True LOC110500662
XM_021578150.2 mRNA upstream 290707 50734724 ~ 50765893 (+) False LOC110500662
XM_021578163.2 mRNA downstream 32088 51100000 ~ 51101654 (+) True LOC110500672
XM_021578164.2 mRNA downstream 39818 51107730 ~ 51110207 (+) True elp5
XM_021578165.2 mRNA downstream 48450 51116362 ~ 51133346 (+) False LOC110500674
XM_021578166.2 mRNA downstream 48451 51116363 ~ 51133346 (+) False LOC110500674
NM_001165091.1 mRNA downstream 66586 51134498 ~ 51141897 (+) False gbrap
TU2002232 other upstream 453323 50598910 ~ 50603277 (+) False LOC110500883
TU2002231 other upstream 453323 50599527 ~ 50603277 (+) True LOC110500883
TU2001255 other upstream 1447020 49606153 ~ 49609580 (+) False LOC110500625
TU2001256 other upstream 1447020 49606153 ~ 49609580 (+) True LOC110500625
TU2001181 other upstream 1609974 49445839 ~ 49446626 (+) True G1747814
TU2003188 other downstream 48533 51116445 ~ 51133338 (+) True LOC110500674
TU2003175 other downstream 66177 51134089 ~ 51142008 (+) True gbrap
TU2003336 other downstream 294774 51362686 ~ 51363380 (+) True G1749651
TU2003334 other downstream 351057 51418969 ~ 51450475 (+) False G1749650
TU2003752 other downstream 1003688 52071600 ~ 52079002 (+) True G1750012

Expression Profile