RNA id: XM_021578164.2


Basic Information

Item Value
RNA id XM_021578164.2
length 1678
RNA type mRNA
GC content 0.46
exon number 8
gene id elp5
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 51107730 ~ 51110207 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGCGCGAAAGGGGATACAAACCGGATGCTTATCAAGCATTGAGTTTTCCCTGGCACGAGCTGCGTGTCTTGTACATGGAATACAATCGTACAACTTCATTATTCTCCTAAACGCAAATTTCGGTGCTCCATCTATGTCCAGCTGACAAACGCTTGTCATGAGAATTGTCGTCAGATTTGTAGGGCAGCATCAATATTTGAAGGCGGATGAAGAGGAATCACACGTAATAACCGACACTCTTGCTACAACGTTAGCTAACAATCTGGGCAGCTAGGAAGCCTGTAACGTTAATATGTTGTTGGAAGTTTTGCAAGGAACAGAAGCGGGGGGATTCATTTTGATACAAGATTCTGTGAATTACTGTGGTCGACACCTCCTGAAAAGCTGCATCAATACAGCACTTAAACGGGAAGAAGTGGTCCATGTATTGGGGTTTGAAGTTAGTCAAGAGGAACTCAATGATGGACTCGACAGAACATCTGCACAGAGGCTGCACTTTCACAATGCCTACTCTGACCCTCTCGGCTGGACCGGTAATTCACCGTTTACGGTCCACCAGTTTACCCTAGAGGACATCAGCACTCTTCTCAAACAAACACCTCAGGCCAAAGCAGTGACACTTGTCATTGACTCTCTGTCATGGATTTTGAGGCATCACGACCCTGCTGCTATCTGCCAGAAACTTCAGGCTCTCAAAAAAGGTGGAGTTGTGAGAGCTGTAATTGGTCTGCTGCACTCAGACCTGCATCAGCGAGGCACTGTGGGAAGCATATGCCACTTGGCTACCTCAGTCATCACTGTGGCCCCAGGGACCAGAGGACTAGGGGCCTTCGCCAAAATAACAAGACGCACCAAGTCGGGCAAGCTTATGCAAGATGAGGAGATATTCAGCATCAATGAGGACCTGACAGTTACAATACAGAGCAAACGCAGTCATCCTGGAAGCACACCGATGAATACAGACGAATCTGAGGTGGATCCGACAGCCAACCTGACCTTTAACCTGCGCCTGtctgatacacagagagaggccaAAGAAAAACTGCCGCTTCCCTTCGTCTTCAGTAAAGAGAAGAAGTCAGCACTTCTGCACCCGGGCACCGGTTCAGGACGGATCCTTTACGAGCCTGATGCCAATGATGATTATGACCAGGAGGATCCTGATGACGACCTTGATGTCTAGAGGACAGGCTACTAGCCATGTAGAGCACAGCTCCTTGCAGTTAATGCCACTTTTGGACATGTCTAGTCAGACCCAACACATTAGCCACATGAACTCACATAGACTTATGAATAATGATAAAATAGTTCCTGTAGTTTGTTGCTACTTTTAGGTCTTTAAAGGAGCAACTGAGTTATTGTGATGGCCCTCAACGATGCAAGTGTATACCAACTTAATAATGGTCAATAAAAGCTTGGCCCTGGTCTACTCTTAAAAACAATCAACATCACTGGCATGGAATAGTCAGCAATTAATATACATGAATACAACTTGAATAGCTTGGCTGGACTTCTACGTCATCATCAATGATGACAATATTAAACAACACAATGCTTAttggagtggcaggtagcctagtggttagagcgttgggccagtaatgcaaaggttgctggattgaatccccgagctgccaAAGTAAACAtttatcgttctgcccctgaacaaggcagtta

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG:

id description
K11376 ELP5, IKI1; elongator complex protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2003157 lncRNA upstream 21900 51085569 ~ 51085830 (+) True G1749498
TU2003145 lncRNA upstream 52273 51055242 ~ 51055457 (+) True G1749486
TU2003129 lncRNA upstream 71698 51035570 ~ 51036032 (+) True G1749470
TU2003091 lncRNA upstream 114592 50990742 ~ 50993138 (+) True G1749436
TU2003086 lncRNA upstream 121011 50982248 ~ 50986719 (+) True G1749434
TU2003187 lncRNA downstream 32778 51142985 ~ 51143430 (+) True G1749521
TU2003202 lncRNA downstream 33511 51143718 ~ 51144006 (+) True G1749536
TU2003206 lncRNA downstream 56142 51166349 ~ 51166714 (+) True G1749540
TU2003235 lncRNA downstream 90453 51200660 ~ 51200930 (+) True G1749567
TU2003248 lncRNA downstream 129064 51239271 ~ 51239603 (+) True G1749580
XM_021578163.2 mRNA upstream 6076 51100000 ~ 51101654 (+) True LOC110500672
XM_021578158.2 mRNA upstream 39818 51053386 ~ 51067912 (+) False LOC110500669
XM_036958127.1 mRNA upstream 39818 51056162 ~ 51067912 (+) False LOC110500669
XM_021578159.2 mRNA upstream 39818 51056600 ~ 51067912 (+) True LOC110500669
XM_021578155.2 mRNA upstream 198123 50906480 ~ 50909607 (+) True LOC110500665
XM_021578165.2 mRNA downstream 6155 51116362 ~ 51133346 (+) False LOC110500674
XM_021578166.2 mRNA downstream 6156 51116363 ~ 51133346 (+) False LOC110500674
NM_001165091.1 mRNA downstream 24291 51134498 ~ 51141897 (+) False gbrap
XR_005038631.1 mRNA downstream 35073 51145280 ~ 51153770 (+) False LOC110500675
XM_021578167.2 mRNA downstream 35085 51145292 ~ 51153770 (+) False LOC110500675
TU2002232 other upstream 504453 50598910 ~ 50603277 (+) False LOC110500883
TU2002231 other upstream 504453 50599527 ~ 50603277 (+) True LOC110500883
TU2001255 other upstream 1498150 49606153 ~ 49609580 (+) False LOC110500625
TU2001256 other upstream 1498150 49606153 ~ 49609580 (+) True LOC110500625
TU2001181 other upstream 1661104 49445839 ~ 49446626 (+) True G1747814
TU2003188 other downstream 6238 51116445 ~ 51133338 (+) True LOC110500674
TU2003175 other downstream 23882 51134089 ~ 51142008 (+) True gbrap
TU2003336 other downstream 252479 51362686 ~ 51363380 (+) True G1749651
TU2003334 other downstream 308762 51418969 ~ 51450475 (+) False G1749650
TU2003752 other downstream 961393 52071600 ~ 52079002 (+) True G1750012

Expression Profile