RNA id: TU2003175


Basic Information

Item Value
RNA id TU2003175
length 1724
RNA type TUCP
GC content 0.42
exon number 4
gene id gbrap
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 51134089 ~ 51142008 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTATTACAGCCCCACAATAACTAACTTCCAGCGCTGTCAAAATTAATAATTTATTTCAGACATTAATTTGGCAGTCTTGAATTCGCTTGCTGCCAATGACTGTTCGCCACGGAAACTGCAGTGGATGGGTCATATGACTAGGGCAACTGCCTCATCACAGCCGGTTGGACAAAATAAAGTAGTActattgaaaaaaataataattgggcAACAACTATGAAACAAAACCACTGCTAATTTGTTAATCATTACATTTCGATTAATTGATGAATATGACTAAACAATATCAACCTAACCACAAACAGTGTGGTTCTTTGCGGTCAACGTTCATATTTCCACAATCCATTTTAGCTGTGCTGTACAGACCTCCCTTTGGCGTCGTATGTTATGGTATCCCTCCGCCGCAGTCGCACTAGGAAAGAACCCGAACAAAACAGTAGCCCAACTAGCTAGCGTTGTCGACGAATTACTATTTGAGGAATCCCAGTCGGATATCTCAGATATACCTACCGACAGCCTGTCATTCGTTTGACAATGAAGTTTCAATACAAAGAAGAGCACCCATTTGAGAAGAGACGGTCTGAGGGCGAGAAAATAAGAAAGAAGTATCCGGACAGGGTACCCGTAATTGTGGAAAAAGCCCCCAAAGCAAGGATAGGAGATCTGGACAAGAAGAAATACCTTGTGCCCTCTGACCTCACAGTGGGCCAGTTCTACTTCCTCATCCGAAAACGAATCCACCTGCGGGCCGAGGACGCCCTGTTCTTCTTTGTAAACAACGTCATTCCTCCCACCTCAGCCACCATGGGCCTTCTATACCAGGAGCACCATGAAGAGGACTTTTTCCTCTACATTGCCTACAGTGATGAGAGTGTCTATGGAGACAGCCAAACGGAAGTCTAAACCCCTCCCCCCTTCGTCACCCAAGTCTTCTCCCCCAAACCTCCCTTATCTCCATTGAAATGCTATATCCAGCTCAGCAGCCTAGTTCCCCGAGCAAAGACGTCAGATGCACTTTCCCTCCCCCTCATCCATCCATTTTTACCTCTTTAATACTCTTCGCACAGTCTGAATTTTATTTGCCTCCGGGTCTCCGAGATGGGGATTTCGGTTGAATGGTCCCATGGCCAGTTTTCATAGTGCTTTAATCATGCTGAAACGGATAGAGGAGAGATGCCATTTTGAAATGAGTGTTAGAATTAGACCATATTACCAGTCATTATAAAGATGTGTAAACTTTGGATGTAGCGTGATAGGTTAAACTCTGCTCCATTTGGCAATGAAAAAATGTCATGTTTACTAATGTATTAGCGCAGGTAAGATACTCTGACGACGTAGTGTATTTGACGTCTGACTGGAGTAGAATAGAATTCCGACTAAACCATCTTCCGCCTGTCTCCGCTTTCAGtggttaaaaaaaatctattattTTGATTACTATTGATTCTTTATTATTGTACTTGTAATTTTTAGATGGCTTAATTTCTGAAAAGTATTGTGAAGCTCAGTGCAATTTTACTTTTTAAAAGTTTTGTTCTACTTTAAAAAAGTTAGAACTCGGTATAGCTGTTACTGGCACTCTCCACTCGTGATAAAATGTGCTGAAAAGCCAACTTTGTTTCCTGTCTTTTCGTTACTGTCTTTTTTTGCCTGACTTGTCCTGCATATCTCTACTGTATGTGAACATATGGAAAGTTTCCGCAACCATAATCTTGAAagtgg

Function

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0007420 brain development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2003157 lncRNA upstream 48259 51085569 ~ 51085830 (+) True G1749498
TU2003145 lncRNA upstream 78632 51055242 ~ 51055457 (+) True G1749486
TU2003129 lncRNA upstream 98057 51035570 ~ 51036032 (+) True G1749470
TU2003091 lncRNA upstream 140951 50990742 ~ 50993138 (+) True G1749436
TU2003086 lncRNA upstream 147370 50982248 ~ 50986719 (+) True G1749434
TU2003187 lncRNA downstream 977 51142985 ~ 51143430 (+) True G1749521
TU2003202 lncRNA downstream 1710 51143718 ~ 51144006 (+) True G1749536
TU2003206 lncRNA downstream 24341 51166349 ~ 51166714 (+) True G1749540
TU2003235 lncRNA downstream 58652 51200660 ~ 51200930 (+) True G1749567
TU2003248 lncRNA downstream 97263 51239271 ~ 51239603 (+) True G1749580
XM_021578165.2 mRNA upstream 743 51116362 ~ 51133346 (+) False LOC110500674
XM_021578166.2 mRNA upstream 743 51116363 ~ 51133346 (+) False LOC110500674
XM_021578164.2 mRNA upstream 23882 51107730 ~ 51110207 (+) True elp5
XM_021578163.2 mRNA upstream 32435 51100000 ~ 51101654 (+) True LOC110500672
XM_021578158.2 mRNA upstream 66177 51053386 ~ 51067912 (+) False LOC110500669
XR_005038631.1 mRNA downstream 3272 51145280 ~ 51153770 (+) False LOC110500675
XM_021578167.2 mRNA downstream 3284 51145292 ~ 51153770 (+) False LOC110500675
XM_021578169.2 mRNA downstream 3285 51145293 ~ 51153770 (+) False LOC110500675
XM_021578168.2 mRNA downstream 3289 51145297 ~ 51153770 (+) True LOC110500675
XM_021578172.2 mRNA downstream 27308 51169316 ~ 51174187 (+) False LOC110500677
TU2003188 other upstream 751 51116445 ~ 51133338 (+) True LOC110500674
TU2002232 other upstream 530812 50598910 ~ 50603277 (+) False LOC110500883
TU2002231 other upstream 530812 50599527 ~ 50603277 (+) True LOC110500883
TU2001255 other upstream 1524509 49606153 ~ 49609580 (+) False LOC110500625
TU2001256 other upstream 1524509 49606153 ~ 49609580 (+) True LOC110500625
TU2003336 other downstream 220678 51362686 ~ 51363380 (+) True G1749651
TU2003334 other downstream 276961 51418969 ~ 51450475 (+) False G1749650
TU2003752 other downstream 929592 52071600 ~ 52079002 (+) True G1750012
TU2003773 other downstream 952701 52094709 ~ 52095105 (+) True G1750030
TU2003797 other downstream 1049192 52191200 ~ 52197007 (+) True G1750050

Expression Profile